Published December 6, 2025
| Version v1
Dataset
Open
Benchmarking_tissue_preparation_Stage2
Authors/Creators
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1.
Harvard Medical School
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2.
Beth Israel Deaconess Medical Center
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3.
Ohio State University
Description
This dataset consists of two folders:
1) data_mesmer, which contains the .csv files of single-cell marker signal intensity data from Mesmer cell segmentation for all experiments. These files were used as input for the data preprocessing and visualization pipeline. Refer to the ‘README.md’ for more details.
2) data_cellXpress, which contains the .csv files of single-cell marker signal intensity data from cellXpress2 cell segmentation for all experiments. These files were used as input for the data preprocessing and visualization pipeline. Refer to the ‘README.md’ for more details.
Codes used can be found at https://github.com/SizunJiangLab/Benchmarking_tissue_preparation/ .
Files
data_mesmer.zip
Additional details
Related works
- Is supplemented by
- Dataset: 10.5281/zenodo.11410274 (DOI)
References
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