Supporting material for "Efficiency of RNAi based gene silencing in fungi - a review and meta-analysis"

Supplementary material for the publication "Efficiency of RNAi based gene silencing in fungi - a review and meta-analysis"

• Barth et al-150725_supplements.docx - Contains Supplementary Figure S1 and Supplementary Methods S1-S4.

Supplementary Data

• Data S1: Search_results_05082024.xlsx - Complete list of publications returned by the PubMed database query.
• Data S2: paper_list.xlsx - Complete list of publications included in the meta-analysis.
• Data S3: collected_figures_metaDigitize.zip - All figures used to extract resistance data when exact values were not directly available in the publications. Includes the script used for data extraction.
• Data S4: data_current.csv - Raw experiment data extracted for the meta-analysis. 
• Data S5: data_edited.csv & data_edited.RData - Edited experiment data: similar experiments were merged into representative entries and imputation was performed.

Supporting files

• File S1: 01-data_editing.Rmd & 01-data_editing.html - Rscript containing all data editing steps, including experiment merging and data imputation.
• File S2: 02-data_overview.Rmd & 02-data_overview.html - Rscript providing a brief overview of the data.
• File S3: 03-generate_figures.Rmd & 03-generate_figure.html - Rscript performing the meta-regression and ploting data points.