Published December 22, 2025
| Version 1.0
Software
Open
MFSE – MicroFossil Segmentation Editor – A GUI for editing 3D segmentations of foraminifera derived from x-ray µCT
Description
X-ray micro computer tomography (x-ray µCT) allows the quantification of morphological features of microfossils in an unprecedented level of detail and completeness. This software toolbox is designed to assist researchers in the extraction of morphological data from the µCT scan data accurately and reproducibly and allows the comprehensive manipulation of microfossil (in particular foraminifera) segmentation data.
Files
Files
(180.7 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:d402a480818b4c13985a7445fa38ec92
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180.7 MB | Download |
Additional details
Dates
- Available
-
2025-12-22Initial release
Software
- Repository URL
- https://github.com/msiccha/MFSE.git
- Programming language
- MATLAB
- Development Status
- Active
References
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- Schalk, S. (2011). Voxel Image (https://www.mathworks.com/matlabcentral/fileexchange/30374-voxel-image), MATLAB Central File Exchange. Retrieved September 26, 2023.
- Legland, D. (2025). MatGeom: A toolbox for geometry processing with MATLAB. SoftwareX, 29, 101984. DOI:10.1016/j.softx.2024.101984
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- Hoelzer, S. (2025). Progressbar (https://de.mathworks.com/matlabcentral/fileexchange/6922-progressbar), MATLAB Central File Exchange. Retrieved 24. November 2025.
- Koblick, D. (2025). rotVecAroundArbAxis (https://de.mathworks.com/matlabcentral/fileexchange/49916-rotvecaroundarbaxis-unitvec2rotate-rotationaxisunitvec-theta), MATLAB Central File Exchange. Retrieved 9, December 2025.
- Axis Maps / Woodruff, A. (2004), colorbrewer (https://github.com/axismaps/colorbrewer/?tab=Apache-2.0-1-ov-file), GitHub. Retrieved 24, November 2025.
- Siccha, M., Morard, R., Meilland, J. et al. (2023). Collection of X-ray micro computed tomography images of shells of planktic foraminifera with curated taxonomy. Sci Data 10, 679. DOI:10.1038/s41597-023-02498-0