Analysis notebooks for the CREsted manuscript

Kempynck, Niklas; De Winter, Seppe; Blaauw, Cas; Konstantakos, Vasileios; Aerts, Stein

doi:10.5281/zenodo.17791384

Published December 2, 2025 | Version v2

Computational notebook Open

Analysis notebooks for the CREsted manuscript

1. KU Leuven
2. VIB.AI: Center for AI and Computational Biology

Scripts and notebooks for analyses in "CREsted: modeling genomic and synthetic cell type-specific enhancers across tissues and species".
For CREsted source code & documentation please visit: the CREsted repository and documentation.
The manuscript's Data Availability section contains a detailed description of all public and new data used for all analyses

Files

CREsted-paper-main (1).zip

Files (136.8 MB)

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Repository URL: https://github.com/aertslab/CREsted-paper/tree/main
Programming language: Python , Jupyter Notebook
Development Status: Active

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DOI

Resource type

Computational notebook

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Zenodo

License: Creative Commons Attribution 4.0 International

The Creative Commons Attribution license allows re-distribution and re-use of a licensed work on the condition that the creator is appropriately credited. Read more; VIB License

Academic Non-commercial Software License Agreement The Licensed Software is developed by and on behalf of the Laboratory of Computational Biology of VIB-KU Leuven and is owned by VIB vzw, located at Rijvisschestraat 120, B-9052 Zwijnaarde, Belgium (hereinafter referred to as "VIB"). By downloading or installing the Licensed Software, the user agrees with the terms and conditions below. Definitions “Licensed Software” shall mean CREsted as available on GitHub. "Effective Date" shall mean the date on which you download or install CREsted (as available on GitHub) on your system and which provide you access to the CREsted tool. “Commercial Purposes” shall include (1) the use of Licensed Software to provide a service, information or data that is directly or indirectly conveyed to any third party against compensation, (2) any type of transfer of the Licensed Software for compensation, and (3) any other use of Licensed Software that supports commercial entities. License 1. 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Technical metadata

Created: December 2, 2025
Modified: December 2, 2025

Analysis notebooks for the CREsted manuscript

Authors/Creators

Description

Files

CREsted-paper-main (1).zip

Files (136.8 MB)

Additional details

Software