Xenium5k UC data

Jain, Tanvi; xavier, ramnik; Graham, Daniel

doi:10.5281/zenodo.17781898

Published December 1, 2025 | Version v1

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Xenium5k UC data

1. Broad Institute
2. Massachusetts General Hospital

Contributors

Researcher:

Jain, Tanvi¹

Supervisor (2):

1. Broad Institute of MIT and Harvard
2. Broad Institute
3. Massachusetts General Hospital

This record contain processed xenium 5k 3D cell segmented spatial transcriptomic files from human gut with ulcerative colitis tissue:

v4_103025_annotIEL_UC_xenium5kobj.h5ad: anndata object (scanpy) for two ulcerative colitis slides

Anndata objects were generated in Scanpy v1.10.4

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Additional details

Repository URL: https://gitlab.com/xavier-lab-computation/public/human_gut_cd4_t_cell_profiling/-/blob/master/xenium/scripts/gitlab_spatial-TMIGD2HHLA_spatialcolocalization_102525.ipynb?ref_type=heads
Programming language: Python

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DOI

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Dataset

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Zenodo

Languages

English

License: Creative Commons Attribution 4.0 International

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Technical metadata

Created: December 2, 2025
Modified: December 2, 2025

Xenium5k UC data

Authors/Creators

Contributors

Researcher:

Supervisor (2):

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