unipept/unipept: 6.5.0

Unipept 6.5.0 is a major new release that brings support for the PathwayPilot to Unipept. PathwayPilot is a tool designed to highlight the metabolic activity of the organisms present in samples that are being studied. It supports both single sample analysis, as well as the comparative analysis of multiple samples to each other.

New features / enhancements:

• Integrate the PathwayPilot into Unipept (#1803).
• Labels for the barplot visualization are now user resizable (#1792)
• Improved performance of GO namespace iteration (#1780)
• Improved the UI of the "outdated analysis" warning (#1766)
• Improved performance of count tables (#1768)

Bug fixes:

• Fixed hardcoded URL that was used for the TPA analysis (#1779)

Dependency updates:

• @vueuse/core: ^14.1.0 → ^14.2.1 (#1793)
• dompurify: ^3.3.1 → ^3.3.3 (#1805, #1787)
• html-to-image: ^1.11.11 → ^1.11.13 (#1793)
• marked: ^17.0.1 → ^18.0.0 (#1793, #1798, #1805, #1787)
• pinia: ^3.0.2 → ^3.0.4 (#1793)
• vue: ^3.5.26 → ^3.5.32 (#1793, #1805, #1787)
• vue-router: ^4.6.4 → ^5.0.4 (#1787)
• vuetify: ^3.11.6 → ^4.0.5 (#1793, #1798, #1805, #1826)
• @playwright/test: ^1.57.0 → ^1.59.1 (#1793, #1787)
• @types/node: ^25.0.8 → ^25.6.0 (#1793, #1801, #1798, #1805, #1787)
• @typescript-eslint/eslint-plugin: ^8.53.0 → ^8.58.1 (#1793, #1798, #1805, #1787)
• @typescript-eslint/parser: ^8.53.0 → ^8.58.1 (#1793, #1798, #1805, #1787)
• @vitejs/plugin-vue: ^6.0.3 → ^6.0.5 (#1793, #1787)
• @vitest/coverage-v8: ^4.0.17 → ^4.1.4 (#1793, #1787)
• eslint: ^9.39.2 → ^10.2.0 (#1798, #1787)
• eslint-plugin-vue: ^10.5.0 → ^10.8.0 (#1793, #1798)
• sass: ^1.97.2 → ^1.99.0 (#1793, #1787)
• typescript: ^5.9.3 → ^6.0.2 (#1787)
• vite: ^7.3.1 → ^8.0.8 (#1787)
• vite-plugin-vuetify: ^2.1.1 → ^2.1.3 (#1793)
• vitest: ^4.0.17 → ^4.1.4 (#1793, #1787)
• vue-eslint-parser: ^10.1.4 → ^10.4.0 (#1793, #1798)
• vue-tsc: ^3.2.2 → ^3.2.6 (#1793, #1805, #1787)

Removed dependencies:

• highcharts: ^12.5.0 — removed (#1787)
• highcharts-vue: ^2.0.1 — removed (#1787)
• uuid: ^13.0.0 — removed (#1768)
• @babel/types: ^7.28.6 — removed (#1768)
• @vue/eslint-config-typescript: ^14.6.0 — removed (#1768)
• sass-loader: ^16.0.2 — removed (#1768)