Published December 1, 2025 | Version v1
Poster Open

From Cells to Morphological Profiles A FAIR cloud processing pipeline using Galaxy

  • 1. ROR icon Johannes Gutenberg University Mainz
  • 2. EDMO icon Helmholtz Centre for Environmental Research GmbH - UFZ
  • 3. ROR icon European Molecular Biology Laboratory
  • 1. EDMO icon Johannes Gutenberg University Mainz
  • 2. EDMO icon Helmholtz Centre for Environmental Research GmbH - UFZ
  • 3. ROR icon European Molecular Biology Laboratory

Description

Galaxy is an online computational platform used by a global community of thousands of scientists for processing of large-scale data.This collective effort includes the development of the Galaxy software framework, the integration of analysis tools and visualizations, and the operation of public servers that provide access to Galaxy through web browsers (usegalaxy.eu). Galaxy increases the FAIRness of data analysis pipelines by  providing versioned tools and workflows that can be annotated, shared and published. Furthermore, Galaxy has a dedicated interface for image data analysis—imaging.usegalaxy.eu—providing a comprehensive suite of tools and workflows tailored specifically for imaging scientists. Through the implementation of open source CellProfiler tool into the Galaxy framework, we are creating an interactive evaluation environment for the Cell Painting community. This environment can aid the drug discovery process.

Notes

NFDI4BIOIMAGE is funded by the Deutsche Forschungsgemeinsschaft (DFG, German ResearchFoundation) under the National Research Data Infrastructure, grant number NFDI46/1, project number 501864659

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Additional details

Funding

Deutsche Forschungsgemeinschaft
NFDI4BIOIMAGE NFDI 46/1