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Published November 30, 2025 | Version v2.5.10.0
Software Open

github.com/broadinstitute/viral-pipelines/sarscov2_nextstrain_aligned_input

Authors/Creators

Description

Take aligned assemblies, build trees, and convert to json representation suitable for Nextstrain visualization. See https://nextstrain.org/docs/getting-started/ and https://nextstrain-augur.readthedocs.io/en/stable/

Files

github.com-broadinstitute-viral-pipelines-sarscov2_nextstrain_aligned_input_v2.5.10.0.zip

Files (29.8 kB)

Additional details

Related works

Is identical to
https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.17772929 (URL)
https://dockstore.org/workflows/github.com/broadinstitute/viral-pipelines/sarscov2_nextstrain_aligned_input:v2.5.10.0 (URL)
https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fbroadinstitute%2Fviral-pipelines%2Fsarscov2_nextstrain_aligned_input/versions/v2.5.10.0/PLAIN-WDL/descriptor/sarscov2_nextstrain_aligned_input.wdl (URL)