Published March 28, 2023 | Version 1.0.1
Dataset Open

UCNEbase - A database for ultraconserved noncoding elements and genomic regulatory blocks (Release version 1.0.1 - March 2023)

Description

UCNEbase provides information on the evolution and genomic organization of
ultra-conserved non-coding elements (UCNEs) in multiple vertebrate species.
It currently covers 4351 such elements in 18 different species. Around half
of these elements are located within intergenic regions (2'139) and the rest
are located within non-coding parts of genes: introns (1'713) and UTRs (499).
The majority of UCNEs are supposed to be transcriptional regulators of key
developmental genes.

Detailed description of the resource can be found in the UCNEbase_doc.pdf file
included in this directory.

Files

clusters.zip

Files (21.4 MB)

Name Size Download all
md5:9449fa11a1535d47779fa5be91868ab3
531.0 kB Preview Download
md5:8d96243f5b4db624d81b8e58ee53ed38
1.1 MB Preview Download
md5:4482bb40d99683b72c6dad1c17be6338
1.1 MB Preview Download
md5:331511ae9bc8d78cdc39151068412f4e
16.3 MB Preview Download
md5:45e7750b8ef103beff0103539120175a
1.7 kB Download
md5:d61c3808991c82ebedcdc651f406f7b6
1.2 MB Preview Download
md5:d300c29e72e4b69f1b05f104842be1a5
1.2 MB Preview Download

Additional details

References

  • UCNEbase - a database of ultra-conserved non-coding elements and genomic regulatory blocks. Dimitrieva, S. and Bucher, P. Nucleic Acids Research, Volume 41, Pages D101-D109 (2013) doi:10.1093/nar/gks1092