Published November 24, 2025 | Version v1
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Structural remodeling of the mitochondrial protein biogenesis machinery under proteostatic stress- WB images

  • 1. ROR icon Universitätsmedizin Göttingen
  • 2. ROR icon Multiscale Bioimaging
  • 3. ROR icon Aligning Science Across Parkinson's
  • 4. ROR icon Instituto Biofisika
  • 5. Basque Resource for Electron Microscopy
  • 6. ROR icon MRC Protein Phosphorylation and Ubiquitylation Unit
  • 7. ROR icon Tel Aviv University
  • 8. UK Dementia Research Institute Parkinson's Research Centre at University of Edinburgh
  • 9. ROR icon Ikerbasque
  • 10. ROR icon University of Göttingen

Description

Cells have evolved organelle-specific responses to maintain protein homeostasis (proteostasis). During proteostatic stress, mitochondria downregulate translation and enhance protein folding, yet the underlying mechanisms remain poorly defined. Here, we employed cryo-electron tomography to observe the structural consequences of mitochondrial proteostatic stress within human cells. We detected protein aggregates within the mitochondrial matrix, accompanied by a marked remodeling of cristae architecture. Concomitantly, the number of mitochondrial ribosome complexes was significantly reduced. Mitochondrial Hsp60 (mHsp60), a key protein folding machine, underwent major conformational changes to favor complexes with its co-chaperone mHsp10. We visualized the interactions of mHsp60 with native substrate proteins, and determined in vitro mHsp60 cryo- EM structures enabling nucleotide state assignment of the in situ structures. These data converge on a model of the mHsp60 functional cycle and its essential role in mitochondrial proteostasis. More broadly, our findings reveal structural mechanisms governing mitochondrial protein biosynthesis and their remodeling under proteostatic stress.

Technical info

Whole-cell lysates (1 mg) were incubated overnight at 4 °C with 10 μg of GFP beads (DU61915Agarose-MRC Reagent & Services). Beads were washed three times with lysis buffer containing 250 mM NaCl, and bound proteins were eluted in 10 μL of 2× LDS sample buffer. Eluates were heated at 70 °C for 10 min, followed by the addition of 2.5% 2- mercaptoethanol. This protocol was adapted from dx.doi.org/10.17504/protocols.io.eq2ly7kxqlx9/v1.

Samples were resolved by SDS–PAGE using 4–12% Bis-Tris gels and transferred to 0.45 μm polyvinylidene difluoride membranes (Protran, Immobilon-P). Membranes were blocked for 1 h at room temperature in 5% skimmed milk in TBS-T (50 mM Tris-HCl, 150 mM NaCl, 0.1% Tween-20, pH 7.5), and incubated overnight at 4 °C with the indicated primary antibodies. Detection was performed using HRP-conjugated secondary antibodies and enhanced chemiluminescence. A detailed protocol for PINK1-Parkin signalling immunoblotting is available at dx.doi.org/10.17504/protocols.io.bswanfae.

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ATF-4 (upper band HSP60) MRCusers 2025-07-30 13h57m27s(Chemiluminescence).tif

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