Published October 3, 2025 | Version v0.0.3
Software Open

CIRCE benchmarking resources - large files

Authors/Creators

  • 1. ROR icon Institut Pasteur

Description

The large files necessary to reproduce the results of the Manuscript:


CIRCE: a scalable Python package to predict cis-regulatory DNA interactions from single-cell chromatin accessibility data
Rémi Trimbour, Julio Saez-Rodriguez, Laura Cantini
bioRxiv 2025.09.23.678054; doi: https://doi.org/10.1101/2025.09.23.678054

 

It currently contains the singularity images of Cicero and CIRCE (0.3.9) used for the benchmarking, and the PBMC10X dataset preprocessed.

Files

Files (3.4 GB)

Name Size
md5:79fcf16f6857ebd685e1afc4cf482824
1.5 GB Download
md5:637cfd4fc006e53bd09865b5b78de09c
1.1 GB Download
md5:67092d66dddf827c4b981167ff6b2a62
784.4 MB Download

Additional details

Software

Repository URL
https://github.com/cantinilab/CIRCE
Programming language
Python , R
Development Status
Active