Published October 3, 2025
| Version v0.0.3
Software
Open
CIRCE benchmarking resources - large files
Description
The large files necessary to reproduce the results of the Manuscript:
CIRCE: a scalable Python package to predict cis-regulatory DNA interactions from single-cell chromatin accessibility data
Rémi Trimbour, Julio Saez-Rodriguez, Laura Cantini
bioRxiv 2025.09.23.678054; doi: https://doi.org/10.1101/2025.09.23.678054
It currently contains the singularity images of Cicero and CIRCE (0.3.9) used for the benchmarking, and the PBMC10X dataset preprocessed.
Files
Files
(3.4 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:79fcf16f6857ebd685e1afc4cf482824
|
1.5 GB | Download |
|
md5:637cfd4fc006e53bd09865b5b78de09c
|
1.1 GB | Download |
|
md5:67092d66dddf827c4b981167ff6b2a62
|
784.4 MB | Download |
Additional details
Software
- Repository URL
- https://github.com/cantinilab/CIRCE
- Programming language
- Python , R
- Development Status
- Active