There is a newer version of the record available.

Published November 17, 2025 | Version v1.4.6
Software Open

epi2me-labs/wf-bacterial-genomes: v1.4.6

Authors/Creators

  • 1. Oxford Nanopore Technologies
  • 2. @Birkbeck
  • 3. @nanoporetech
  • 4. @LooseLab

Description

Added

  • Added support for data with 5.2.0 basecalling model.
    • Updated docker image to use Medaka v2.1.1.

Changed

  • Adjust default --chunk_size to 100000, to reduce workflow execution time when using Medaka v2.1.1 for polishing.

Files

epi2me-labs/wf-bacterial-genomes-v1.4.6.zip

Files (19.9 MB)

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md5:f6dca5f31158156eea343112663635dc
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Additional details

Related works

Is supplement to
Software: https://github.com/epi2me-labs/wf-bacterial-genomes/tree/v1.4.6 (URL)

Software

Repository URL
https://github.com/epi2me-labs/wf-bacterial-genomes