Published May 6, 2026 | Version v0.7.3
Software Open

scverse/spatialdata: v0.7.3

Authors/Creators

  • 1. European Molecular Biology Laboratory
  • 2. Iber Lab - ETH Zürich
  • 3. CZI
  • 4. Cure51 and Gustave Roussy Institute
  • 5. @nvidia @scverse @theislab
  • 6. @lizard-bio
  • 7. Helmholtz Zentrum
  • 8. Wellcome Sanger Institute
  • 9. @czbiohub-sf @mehta-lab
  • 10. @theislab
  • 11. Genentech
  • 12. ETH Zurich
  • 13. MD Anderson Cancer Center
  • 14. University of Warsaw, Faculty of Mathematics, Informatics, and Mechanics

Description

<!-- Release notes generated using configuration in .github/release.yml at v0.7.3 -->

What's Changed

Added

  • Add Python 3.14 support by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1114

Changed

  • New lazy to_multiscale() for labels by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1068
  • Change lower bound anndata by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1083

Fixed

  • Fix TableModel validator to accept pandas StringDtype by @jlr13 in https://github.com/scverse/spatialdata/pull/1063
  • test: make pre-release tests work by @flying-sheep in https://github.com/scverse/spatialdata/pull/1071
  • Fix for FutureWarning: functools.partial ... by @selmanozleyen in https://github.com/scverse/spatialdata/pull/1076
  • Fix transform graph by @melonora in https://github.com/scverse/spatialdata/pull/1077
  • Fix performance regression for multiscale images (#1079) by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1080
  • Faster spatialdata import time by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1075
  • Preserve attrs on Dask DataFrame sample() by @LiudengZhang in https://github.com/scverse/spatialdata/pull/1088
  • ome zarr chunks by @ArneDefauw in https://github.com/scverse/spatialdata/pull/1092
  • fix: don't lower bound anndata so high by @ilan-gold in https://github.com/scverse/spatialdata/pull/1102
  • Workaround for KeyError 'ome' when writing multiscale images by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1115
  • Reduce warnings by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1113
  • Reduce time cost of tests by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1116
  • Fix numba JIT configuration failing on airflow runner by @LucaMarconato in https://github.com/scverse/spatialdata/pull/1117

New Contributors

  • @jlr13 made their first contribution in https://github.com/scverse/spatialdata/pull/1063
  • @flying-sheep made their first contribution in https://github.com/scverse/spatialdata/pull/1071
  • @selmanozleyen made their first contribution in https://github.com/scverse/spatialdata/pull/1076
  • @LiudengZhang made their first contribution in https://github.com/scverse/spatialdata/pull/1088

Full Changelog: https://github.com/scverse/spatialdata/compare/v0.7.2...v0.7.3

Files

scverse/spatialdata-v0.7.3.zip

Files (433.8 kB)

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Additional details

Related works

Is supplement to
Software: https://github.com/scverse/spatialdata/tree/v0.7.3 (URL)

Software

Repository URL
https://github.com/scverse/spatialdata