Published November 3, 2025
| Version v1.0
Software
Open
github.com/iwc-workflows/chipseq-sr/main
Description
Complete ChIP-seq analysis for single-end sequencing data. Processes raw FASTQ files through adapter removal (fastp), alignment to reference genome (Bowtie2), and quality filtering (MAPQ greater than 30). Peak calling with MACS2 uses a fixed extension of 200bp to identify protein-DNA binding sites. Generates alignment files, coverage, peak calls, and quality metrics for downstream analysis.
Files
github.com-iwc-workflows-chipseq-sr-main_v1.0.zip
Files
(7.4 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:967792cdb946b05096b659106f9467e6
|
7.4 kB | Preview Download |
Additional details
Related works
- Is identical to
- https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.17514334 (URL)
- https://dockstore.org/workflows/github.com/iwc-workflows/chipseq-sr/main:v1.0 (URL)
- https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-sr%2Fmain/versions/v1.0/PLAIN-gxformat2/descriptor/chipseq-sr.ga (URL)