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Published November 3, 2025 | Version v1.0.0
Software Open

FastMDAnalysis: Software for Automated Analysis of Molecular Dynamics Trajectories

  • 1. AAi Research Lab, California State University Dominguez Hills
  • 2. Biophysics Program, California State University Dominguez Hills
  • 3. Department of Physics, California State University Dominguez Hills

Description

FastMDAnalysis v1.0.0 — Software for Automated Analysis of Molecular Dynamics Trajectories

  • Go from MD trajectory data to a presentation slide deck in one line of code.
  • It's designed to improve workflow efficiency, usability, and reproducibility.
  • Perform complex molecular dynamics analyses with intuitive, single-line commands
  • Automatically generate publication-quality figures with customizable styling for immediate use
  • Seamlessly switch between Python API for advanced workflows and CLI for rapid batch processing
  • Scalable workflows that handle everything from quick exploratory analysis to large-scale production runs

Notes

If you use this software in your work, please cite:

Aina, A. and Kwan, D. (2025) “FastMDAnalysis: Software for Automated Analysis of Molecular Dynamics Trajectories”. Zenodo.  https://doi.org/10.5281/zenodo.17510591

Files

aai-research-lab/FastMDAnalysis-v1.0.0.zip

Files (16.7 MB)

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Additional details

Related works

Software

Repository URL
https://github.com/aai-research-lab/FastMDAnalysis
Programming language
Python
Development Status
Active