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Published October 31, 2025 | Version v2
Model Open

Models trained on intestinal organoid data

Authors/Creators

  • 1. ROR icon Institute for Atomic and Molecular Physics
  • 2. Universitair Medisch Centrum Utrecht

Description

Models for cell, link and division detection trained on mouse intestinal organoid data. Images are of a H2B-mCherry tag using a confocal microscope at 0.32x0.32x2um voxel size. In this version the models contain both a tensorflow (.pb) and a pytorch (.keras) version

Files

models_all.zip

Files (296.3 MB)

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Additional details

Related works

Is described by
Preprint: 10.1101/2024.10.11.617799 (DOI)
Publication: 10.1038/s41592-025-02845-6 (DOI)
Is documented by
Software: https://github.com/jvzonlab/OrganoidTracker (URL)

Software

Repository URL
https://github.com/jvzonlab/OrganoidTracker
Programming language
Python
Development Status
Active