pynucastro/pynucastro: pynucastro 2.10.0

2.10.0

• AmrexAstroCxxNetwork :

  • use C++20 and do some optimizations (#1224)
  • separate derived rates into their own header (#1227)
  • remove unused functions (#1229)
  • fix whitespace formatting (#1235)
  • set PYNUCASTRO_NETWORK=TRUE at compile time (#1236)
  • template the spin function (#1239, #1240)
  • work on "T9" directly (#1241)
  • switch partition function data to inline (#1243)
  • update the contents of the array to filter out unneeded rates (#1244)
  • inline the tabular rate data (#1245)
  • use an enum for NSE_INDEX (#1254)
  • eliminate a copy of the rates in the weak ydot eval (#1283)
  • split the header files up (#1343)

• ApproximateRate :

  • reorganize the constructor to make it easier to add other approximations (#1329)
  • add C+C, C+O, O+O approximate rates (#1328)

• SimpleCxxNetwork / FortranNetwork / BaseCxxNetwork :

  • add a partition_function.H stub (#1226)
  • group log(screening) and log(rate) together before the exp (#1259)
  • support partition functions and DerivedRate (#1324)
  • tabulated weak rates (via TabularRate) (#1332)
  • cleaning / reorg of headers (#1246, #1331, #1345)

• PythonNetwork / RateCollection :

  • group log(rate) and log(screening) before doing exp() in PythonNetwork (#1257)
  • add a method to pre-determine network NSE compatibility (#1276, #1280)
  • add a method to integrate the network (#1279)
  • store the weak rate tables directly in the module (#1282)
  • add NetworkSolution to manage working with integration solutions (#1288, #1352, #1353)
  • Move the baryon conservation check to _set_print_representation. This will catch more issues. (#1295)
  • When we make a network, make a copy of the rates + implement a custom __copy__ function to Rate (#1307)
  • simplify the construction of unique_nuclei (#1309)
  • Network plots now work if show_small_ydot=True even if no rates are above the threshold. (#1341)

• general rate changes:

  • have TemperatureTabularRate work in natural log space (#1228)
  • allow TemperatureTabularRate to extrapolate (#1233)
  • updated ModifiedRate to correctly handle screening nuclei (#1255)
  • add support for StarLib rates (#1258, #1273, #1277, #1281, #1287, #1289, #1293, #1294, #1303, #1318, #1327), including C++ output (#1321)
  • standardize weak_type to work across rate types (#1265)
  • add URLs to the rate source properties CSV file (#1266)
  • clean-up ReacLibRate (#1267)
  • ReacLibRate unit test additions (#1268)
  • clean-up TabularRate (#1278)
  • Rate names no longer include the _removed label on output (#1340)
  • do log term addition for deriving from TemperatureTabularRate (#1230)

• nuclei / screening / partition functions:

  • store partition function data in log space and temperature in T9 (#1231)
  • add neut as an alias for neutrons (#1253)
  • add a general N-body screening prescription (#1260)
  • some optimizations of the nucleus module (#1297)
  • move Composition to its own module under nucdata (#1316)

• testing:

  • add C++ TemperatureTabularRate unit tests (#1225)
  • sync CI benchmarks due to AMReX-Astro Microphysics changes (#1234, #1238, #1248, #1256)
  • add a CUDA C++ compilation test (#1250)
  • add a HIP C++ compilation test (#1251)
  • drop python 3.11 testing (#1252)
  • update CPU dispatch features in unit tests for numpy 2.4.x (#1263)
  • bump actions (#1270)
  • pytest suite optimizations (#1299, #1308)
  • mutability fixes (#1304)
  • reorganize the rate unit tests (#1306)
  • eliminate duplicate temporary dir names (#1311)
  • run tests in parallel (#1312)
  • reorganize the network unit tests (#1319, #1322)
  • use concurrency groups (#1320)
  • add a new helper class, NetworkCompare that allows for testing of python and C++ network results in a single unit test (#1291, #1302, #1315, #1326)
  • update / add to some of the comparison tests (#1313)
  • split up pip requirements to speed up CI setup (#1330)

• git / project infrastructure:

  • add a pull request template (#1264)
  • update Zenodo authors (#1272)

• documentation:

  • add a temperature evolution integration example (#1223)
  • fix some sphinx API doc warning (#1237)
  • update the derived rates documentation (#1247)
  • update docs theme (#1261)
  • copyright (#1274)
  • fix typos (#1284, #1286)
  • linkcheck ignores (#1292)
  • remove unused examples (#1310)
  • document parallel unit tests (#1314)
  • intro overview (#1317)
  • more network exporting descriptions (#1344)

• EOS:

  • Optimizations of the Fermi integrals (#1298)

• helper functionality:

  • A simple interface for working with MESA data was added (#1342)
  • Fix an issue in network_helper if there are no reverse rates (#1323)