WayScience/live_cell_timelapse_apoptosis: Ready for pre-print release

What's Changed

• setup repo by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/1
• Begin profiling by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/2
• Update CP analysis pipelines and environment by @jenna-tomkinson in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/3
• Update CP_parallel utility script to include plugins directory by @jenna-tomkinson in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/4
• rerun with preproccess by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/5
• merge cytoplasmic channels by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/6
• Run CP and scDINO pipeline by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/8
• Segment anything model 2 implementation pilot by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/10
• Refactor directories for files by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/15
• Sam2 run by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/16
• Integrate SAM into cellprofiler and post-processing for image-based profiles by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/17
• platemap generation by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/18
• refactor the file structure by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/19
• refactor ic by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/20
• Cell tracking by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/21
• Sc dino run by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/25
• Merge scDINO and Cellprofiler profiles by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/26
• Rerun post profiling processing by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/24
• Cellprofiling timelape data by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/22
• Cell tracks stats extraction by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/28
• Aggregate cp and sc dino profiles by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/29
• Whole image processing by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/27
• Add dose to agg profiles by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/30
• Rerun aggregation by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/31
• Redo platemap - fix typo by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/32
• Rerun ibp for terminal profiles by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/34
• Check terminal profiling by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/33
• Rerun the profiles by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/36
• Refactor modules by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/37
• Fix aggregation step by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/38
• Preprocess terminal data by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/39
• Fix segmentations by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/40
• Update platemap by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/42
• Offsets plot by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/41
• Update the readme by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/43
• Refactor modules by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/44
• Refactor profiling and tracking by @MikeLippincott in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/45

New Contributors

• @MikeLippincott made their first contribution in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/1
• @jenna-tomkinson made their first contribution in https://github.com/WayScience/live_cell_timelapse_apoptosis/pull/3

Full Changelog: https://github.com/WayScience/live_cell_timelapse_apoptosis/commits/v0.0.1