Dataset required for replication of results in the paper 'kernel DMD for multiome integration and control'
Description
This data includes proteome, transcriptome and metabolome data for two Clusia species under stress and control. It is used as input to code (DOI:) for generating results in the paper 'kernel DMD with control applied to multiome network integration for phenocopying complex biological systems'. The study compares dynamics of two Clusia species using a data-driven dynamic systems tool and finds control features that shift the C3 photosynthetic type to the CAM type. The data uploaded also includes feature names, CAM related features, metabolite names, protein-protein interactions retrieved from STRING database as apriori knowledge for input into the model and gas exchange data used as output.
Files
feature_table.csv
Files
(6.2 MB)
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md5:d15811e6287d36eb29944137ee45f46f
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md5:5eb50fef19c1b773afb2b1f88d9179f8
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md5:02baa1f30a6172c19cab5fd331dd4390
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1.6 MB | Preview Download |
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md5:b41d4bdb6b6fc9731e6be9b75ece865a
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md5:391153434124e74c62c0b5ea4bf637ce
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md5:5eedf0c1b30a8068b0660958890b00ef
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md5:7c4fa57d13ae1387d5ff21a8c1d57f13
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532.6 kB | Download |
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md5:3c0f30b7404094ab571584eb8b349328
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526.5 kB | Download |
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md5:929e91e8dd4010281a11315d842dc637
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858.0 kB | Download |
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md5:ce3f38a2859b95c3e71ae3d2d14e4496
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580 Bytes | Preview Download |
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md5:789c527f3d2c236221d76ac7c891781f
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928 Bytes | Preview Download |
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md5:7b0ac1fa550be6b315a73b7b5682092e
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1.1 kB | Preview Download |
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md5:1589fc59e15c4b58c1f04303be62abfc
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7.9 kB | Preview Download |
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md5:2e07256060ba9013fffe68256ab47adb
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7.9 kB | Preview Download |
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md5:8b3cb43bba0619491551017f17643163
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474.7 kB | Download |
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md5:a5b57737b01a3acf67902866ebfec730
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425.1 kB | Download |
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md5:5964b509f6bd47a161fca02e535ad313
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377.2 kB | Download |
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md5:0f5ae5094a711d28a17abf62fa8bb7a5
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173.9 kB | Download |
Additional details
Software
- Programming language
- Python