Code + input/output data for M. Smite et al. "Image-based physical characterization of magnetotactic bacteria from an environmental sample"
Authors/Creators
- 1. University of Latvia, Institute of Numerical Modelling
-
2.
University of Latvia
Description
Repository contents:
1) Images obtained in velocimetry and magnetic moment measurement experiments with magnetotactic bacteria (MTB);
2) Code used to detect MTB from images, reconstruct MTB trajectories, and determine their magnetic moment, size and velocity statistics (Wolfram Mathematica & Python);
3) Code output: MTB properties and trajectory data, as well as relevant statistics in the form of .pdf and .svg images, .csv and compressed .txt files, .pkl and .wxf binary formats, in addition to videos, other figures, and code snapshots in .pdf format;
Relevant GitHub repositories:
https://github.com/Mihails-Birjukovs/MTB_detection_tracking
https://github.com/Peteris-Zvejnieks/MHT-X
https://github.com/Mihails-Birjukovs/MTB_magnetic_moment_from_U-turn_trajectories
Files
Additional details
Related works
- Continues
- Journal article: 10.1016/j.bpj.2025.06.008 (DOI)
- Is supplement to
- Preprint: 10.48550/arXiv.2506.04011 (DOI)
Funding
- Latvian Council of Science
- A4Mswim lzp-2021/1-0470
Software
- Repository URL
- https://github.com/Mihails-Birjukovs/MTB_magnetic_moment_from_U-turn_trajectories
- Programming language
- Mathematica , Python
- Development Status
- Active