An enhanced qPCR method for rapid Agrilus planipennis detection and monitoring
Authors/Creators
- 1. Swiss Federal Research Institute for Forest, Snow and Landscape, Birmensdorf, Switzerland
- 2. Swedish University of Agricultural Sciences, Alnarp, Sweden
- 3. National Research Council – Institute for Sustainable Plant Protection, Sesto fiorentino, Italy
- 4. Diagnostic moléculaire des organisms nuisibles réglementés des végétaux, Agroscope, Nyon, Switzerland
- 5. Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland
- 6. University of Zurich, Zurich, Switzerland
Description
Emerald ash borer (EAB; Agrilus planipennis) represents a serious threat to North American and European ash species (Fraxinus spp.). Spread of EAB westwards, from European Russia and Eastern Ukraine, could lead to dramatic consequences for native European ash populations. Early detection is essential for fast and successful eradication of new populations. In this study, we developed a new TaqMan qPCR assay allowing for sensitive and specific detection of EAB. We tested the specificity of the assay against 17 European Agrilus spp., eight buprestid species and nine species belonging to other wood-associated beetle taxa. The qPCR assay provided reliable amplification from samples with DNA concentrations as low as 0.5 picograms per reaction. Moreover, DNA could be amplified from different sample types, such as egg casings, leaves, faeces and bore dust from larval galleries. Robustness of the assay was verified by performing a blind test with four different laboratories. Here we provide a highly specific, robust and sensitive assay which can be used for enhanced surveillance of Agrilus planipennis on the European continent.
Files
NB_article_163040.pdf
Files
(572.3 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:cb25019a805f1a53f087bd9abfe72212
|
572.3 kB | Preview Download |
System files
(119.7 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:97d5531e0c07b73ac7522765c8b0cf3f
|
119.7 kB | Download |
Linked records
Additional details
References
- Balakrishnan R (2005) Species concepts, species boundaries and species identification: A view from the Tropics. Systematic Biology 54: 689–693. https://doi.org/10.1080/10635150590950308
- Baranchikov YuN, Seraya LG, Grinash MN (2014) All European ash species are susceptible to emerald ash borer Agrilus planipennis Fairmaire (Coleoptera: Buprestidae) - a Far Eastern invader. Siberian Journal of Forest Science 6: 80–85.
- Cappaert D, McCullough DG, Poland TM, Siegert NW (2005) Emerald Ash Borer in North America: A Research and Regulatory Challenge. American Entomologist (Lanham, Md. ) 51: 152–165. https://doi.org/10.1093/ae/51.3.152
- Crego-Vicente B, Del Olmo MD, Muro A, Fernández-Soto P (2024) Multiplexing LAMP Assays: A Methodological Review and Diagnostic Application. IJMS 25: 6374. https://doi.org/10.3390/ijms25126374
- Drogvalenko AN, Orlova-Bienkowskaja MJ, Bieńkowski AO (2019) Record of the Emerald Ash Borer (Agrilus planipennis) in Ukraine is Confirmed. Insects 10: 338. https://doi.org/10.3390/insects10100338
- EPPO (2007) First report of Agrilus planipennis in the region of Moscow, Russia. https://gd.eppo.int/reporting/article-1038 [Accessed on 18.02.2025]
- EPPO (2013) PRA - EPPO PRA for Agrilus planipennis. https://pra.eppo.int/pra/adfeae21-accb-4743-af2e-02f1fae8da77 [Accessed on 18.02.2025]
- EPPO (2019) Presence of Agrilus planipennis confirmed in Ukraine. https://gd.eppo.int/reporting/article-6632 [Accessed on 18.02.2025]
- EPPO (2021) PM 7/129 (2) DNA barcoding as an identification tool for a number of regulated pests. Bulletin OEPP. EPPO Bulletin. European and Mediterranean Plant Protection Organisation 51: 100–143. https://doi.org/10.1111/epp.12724
- EPPO (2023a) Newsletter of the EPPO Network of experts working on surveillance, monitoring, and control of the Emerald ash borer, Agrilus planipennis. https://www.eppo.int/media/uploaded_images/RESOURCES/special_projects/eab_newsletters/EAB_Newsletter-003-2023_12.pdf [Accessed on 18.02.2025].
- EPPO (2023b) PM 7/154 (1) Agrilus planipennis. Bulletin OEPP. EPPO Bulletin. European and Mediterranean Plant Protection Organisation 53: 285–308. https://doi.org/10.1111/epp.12926
- Floyd RM, Wilson JJ, Hebert PDN (2009) DNA barcodes and insect biodiversity. In: Foottit RG, Adler PH (Eds) Insect Biodiversity: Science and Society. Wiley-Blackwell, Oxford, 417–431. https://doi.org/10.1002/9781444308211.ch17
- Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3: 294–299.
- Gossner MM, Perret-Gentil A, Britt E, Queloz V, Glauser G, Ladd T, Roe AD, Cleary M, Liziniewicz M, Nielsen LR, Ghosh SK, Bonello P, Eisenring M (2023) A glimmer of hope – ash genotypes with increased resistance to ash dieback pathogen show cross-resistance to emerald ash borer. New Phytologist 240: 1219–1232. https://doi.org/10.1111/nph.19068
- Haack RA, Jendek E, Liu H, Marchant KR, Petrice TR, Poland TM, Ye H, Lansing E (2002) The emerald ash borer: A new exotic pest in North America. Newsletter of the Michigan Entomological Society 47: 1–5.
- Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W (2004) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Sciences of the United States of America 101: 14812–14817. https://doi.org/10.1073/pnas.0406166101
- Herms DA (2015) Host range and host resistance. In: Van Driesche RG, Reardon RC (Eds) Biology and Control of Emerald Ash Borer. USDA Forest Service, Forest Health Technology Enterprise Team, Morgantown, WV, 65–73.
- Herms DA, McCullough DG (2014) Emerald ash borer invasion of north america: History, biology, ecology, impacts, and management. Annual Review of Entomology 59: 13–30. https://doi.org/10.1146/annurev-ento-011613-162051
- Jendek E, Poláková J (2014) Host Plants of World Agrilus (Coleoptera, Buprestidae): A Critical Review. Springer International Publishing, Cham, 706 pp. https://doi.org/10.1007/978-3-319-08410-7
- Kelnarova I, Jendek E, Grebennikov VV, Bocak L (2019) First molecular phylogeny of Agrilus (Coleoptera: Buprestidae), the largest genus on Earth, with DNA barcode database for forestry pest diagnostics. Bulletin of Entomological Research 109: 200–211. https://doi.org/10.1017/S0007485318000330
- Khan M, Wang R, Li B, Liu P, Weng Q, Chen Q (2018) Comparative Evaluation of the LAMP Assay and PCR-Based Assays for the Rapid Detection of Alternaria solani. Frontiers in Microbiology 9: 2089. https://doi.org/10.3389/fmicb.2018.02089
- Khodaparast M, Sharley D, Marshall S, Beddoe T (2024) Rapid and Cost‐Effective Platypus eDNA Detection in Waterways Using Loop‐Mediated Isothermal Amplification Assay: Advancing Conservation Efforts. Environmental DNA 6: e70003. https://doi.org/10.1002/edn3.70003
- Krehenwinkel H, Weber S, Künzel S, Kennedy SR (2022) The bug in a teacup - monitoring arthropod-plant associations with environmental DNA from dried plant material. Biology Letters 18: 20220091. https://doi.org/10.1098/rsbl.2022.0091
- Kyei-Poku G, Gauthier D, Quan G (2020) Development of a Loop-Mediated Isothermal Amplification Assay as an Early-Warning Tool for Detecting Emerald Ash Borer (Coleoptera: Buprestidae) Incursions. Journal of Economic Entomology 113: 2480–2494. https://doi.org/10.1093/jee/toaa135
- Kyle KE, Allen MC, Siegert NW, Grabosky J, Lockwood JL (2024) Design of an eDNA sampling method for detection of an endophagous forest pest. NeoBiota 95: 149–164. https://doi.org/10.3897/neobiota.95.118267
- Meshkova V, Borysenko O, Kucheryavenko T, Skrylnyk Y, Davydenko K, Holusa J (2023) Potential Westward Spread of Emerald Ash Borer, Agrilus planipennis Fairmaire, 1888 (Coleoptera: Buprestidae) from Eastern Ukraine. Forests 14: 736. https://doi.org/10.3390/f14040736
- Mittelberger C, Obkircher L, Oberkofler V, Ianeselli A, Kerschbamer C, Gallmetzer A, Reyes-Dominguez Y, Letschka T, Janik K (2020) Development of a universal endogenous qPCR control for eukaryotic DNA samples. Plant Methods 16: 53. https://doi.org/10.1186/s13007-020-00597-2
- Orlova-Bienkowskaja MJ, Drogvalenko AN, Zabaluev IA, Sazhnev AS, Peregudova EY, Mazurov SG, Komarov EV, Struchaev VV, Martynov VV, Nikulina TV, Bieńkowski AO (2020) Current range of Agrilus planipennis Fairmaire, an alien pest of ash trees, in European Russia and Ukraine. Annals of Forest Science 77: 29. https://doi.org/10.1007/s13595-020-0930-z
- Peterson DL, Kyle K, Sallé A, Pecori F, Migliorini D, Santini A, Luchi N, Cleary M (2023a) Specificity and Sensitivity of a Rapid LAMP Assay for Early Detection of Emerald Ash Borer (Agrilus planipennis) in Europe. Forests 14(2): 436. https://doi.org/10.3390/f14020436
- Peterson DL, Pecori F, Luchi N, Migliorini D, Santini A, Kyle KE, Rutledge C, Sallé A, Kaya SO, Ramsfield T, Cleary M (2023b) Development of novel LAMP and qPCR assays for rapid and specific identification of Bronze birch borer (Agrilus anxius). Environmental DNA 5: 1177–1190. https://doi.org/10.1002/edn3.503
- Ratnasingham S, Hebert PDN (2007) bold: The Barcode of Life Data System (http://www.barcodinglife.org). Molecular Ecology Notes 7: 355–364. https://doi.org/10.1111/j.1471-8286.2007.01678.x
- Roe AD, Demidovich M, Dedes J (2018) Origins and History of Laboratory Insect Stocks in a Multispecies Insect Production Facility, With the Proposal of Standardized Nomenclature and Designation of Formal Standard Names. Journal of Insect Science 18: 1. https://doi.org/10.1093/jisesa/iey037
- Roger F, Ghanavi HR, Danielsson N, Wahlberg N, Löndahl J, Pettersson LB, Andersson GKS, Boke Olén N, Clough Y (2022) Airborne environmental DNA metabarcoding for the monitoring of terrestrial insects—A proof of concept from the field. Environmental DNA 4: 790–807. https://doi.org/10.1002/edn3.290
- Scheffer SJ, Lewis ML, Joshi RC (2006) DNA Barcoding Applied to Invasive Leafminers (Diptera: Agromyzidae) in the Philippines. Annals of the Entomological Society of America 99: 204–210. https://doi.org/10.1603/0013-8746(2006)099[0204:DBATIL]2.0.CO;2
- Simon C, Frati F, Beckenbach A, Crespi B, Liu H, Flook P (1994) Evolution, Weighting, and Phylogenetic Utility of Mitochondrial Gene Sequences and a Compilation of Conserved Polymerase Chain Reaction Primers. Annals of the Entomological Society of America 87: 651–701. https://doi.org/10.1093/aesa/87.6.651
- Smitley D, Davis T, Rebek E (2008) Progression of Ash Canopy Thinning and Dieback Outward from the Initial Infestation of Emerald Ash Borer (Coleoptera: Buprestidae) in Southeastern Michigan. Journal of Economic Entomology 101: 1643–1650. https://doi.org/10.1093/jee/101.5.1643
- Valenta V, Moser D, Kapeller S, Essl F (2017) A new forest pest in Europe: A review of Emerald ash borer (Agrilus planipennis) invasion. Journal of Applied Entomology 141: 507–526. https://doi.org/10.1111/jen.12369
- Volkovitsh MG, Bieńkowski AO, Orlova-Bienkowskaja MJ (2021) Emerald Ash Borer Approaches the Borders of the European Union and Kazakhstan and Is Confirmed to Infest European Ash. Forests 12: 691. https://doi.org/10.3390/f12060691
- Webb CR, Mona T, Gilligan CA (2021) Predicting the potential for spread of emerald ash borer (Agrilus planipennis) in Great Britain: What can we learn from other affected areas? Plants, People, Planet 3: 402–413. https://doi.org/10.1002/ppp3.10195
- Wei X, Wu Y, Reardon R, Sun T, Lu M, Sun J (2007) Biology and damage traits of emerald ash borer (Agrilus planipennisFairmaire) in China. Insect Science 14: 367–373. https://doi.org/10.1111/j.1744-7917.2007.00163.x