Published October 9, 2025
| Version v1
Annotation collection
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Pseudomonas sp. KK18 annotation files
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antiSMASH-based annotation of Pseudomonas sp. KK18.zip
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Additional details
References
- Seemann T. 2014. Prokka: rapid prokaryotic genome annotation. Bioinformatics 30:2068–2069. https://doi.org/10.1093/bioinformatics/btu153
- Cantalapiedra CP, Hernández-Plaza A, Letunic I, Bork P, Huerta-Cepas J. 2021. eggNOG-mapper v2: functional annotation, orthology assignments, and domain prediction at the metagenomic scale. Mol Biol Evol 38:5825–5829. https://doi.org/10.1093/molbev/msab293
- Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75. https://doi.org/10.1186/1471-2164-9-75
- Blin K, Shaw S, Kloosterman AM, Charlop-Powers Z, van Wezel GP, Medema MH, Weber T. 2021. antiSMASH 6.0: improving cluster detection and comparison capabilities. Nucleic Acids Res 49:W29–W35. https://doi.org/10.1093/nar/gkab335
- Aramaki T., Blanc-Mathieu R., Endo H., Ohkubo K., Kanehisa M., Goto S., Ogata H. KofamKOALA: KEGG ortholog assignment based on profile HMM and adaptive score threshold. Bioinformatics. 2019 Nov 19. pii: btz859. doi: 10.1093/bioinformatics/btz859.
- Meier-Kolthoff, J. P., and Göker, M. 2019. TYGS: an automated high-throughput platform for state-of-the-art genome-based taxonomy. Nature Communications 10:2182. https://doi.org/10.1038/s41467-019-10210-3
- Patz, S., Gautam, A., Becker, M., Ruppel, S., Rodríguez-Palenzuela, P., and Huson, D. H. 2021. PLaBAse: a comprehensive web resource for analyzing the plant growth-promoting potential of plant-associated bacteria. bioRxiv. https://doi.org/10.1101/2021.12.13.472471
- Chen, L., Yang, J., Yu, J., Yao, Z., Sun, L., Shen, Y., and Jin, Q. 2005. VFDB: a reference database for bacterial virulence factors. Nucleic Acids Research 33:D325–D328. https://doi.org/10.1093/nar/gki008