Published October 7, 2025 | Version v1.3
Software Open

SuchTree: Fast, thread-safe computations with phylogenetic trees

Authors/Creators

Description

New for SuchTree v1.3

  • Automatic URL/file/NEWICK input no longer broken
  • Custom exception classes
  • Improved naming conventions of methods & properties
  • Refactored node query methods
  • Regularized naming and arguments for distance methods
  • Refactored topology analysis methods
  • More traversal methods
  • Refactored graph theory and matrix operations
  • Refactored export methods
  • Stubs for backward compatibility with deprecation warnings
  • Improved test coverage
  • Various bug fixes
  • Verified commits for GitHub, digital attestations for PiPy
  • Renamed master to main
  • New logo, website and documentation

Full Changelog: https://github.com/ryneches/SuchTree/compare/v1.2...v1.3

Notes

If you use this software, please cite it as below.

Files

ryneches/SuchTree-v1.3.zip

Files (11.7 MB)

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md5:b5ec518825f9d8b18686d661168baedf
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Additional details

Related works

Is supplement to
Software: https://github.com/ryneches/SuchTree/tree/v1.3 (URL)

Software

Repository URL
https://github.com/ryneches/SuchTree