Published October 6, 2025
| Version 25.2.2
Software
Open
fMRIPrep: a robust preprocessing pipeline for functional MRI
Authors/Creators
- 1. Department of Psychology, Stanford University, CA, USA
- 2. Department of Radiology, Lausanne University Hospital and University of Lausanne
- 3. Department of Psychology, Stanford University
Contributors
Researcher (66):
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Blair, Ross W.1
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Kent, James D.2
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Salo, Taylor3
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DuPre, Elizabeth4
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Pinsard, Basile5
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Ciric, Rastko1
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Papadopoulos, Dimitri6
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Provins, Céline7
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Sadil, Patrick8
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Heinsfeld, Anibal S.9
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Benson, Noah C.10
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Valabregue, Romain11
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Feingold, Franklin1
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de la Vega, Alejandro2
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Sneve, Markus H.12
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Ma, Feilong13
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Finc, Karolina14
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Erramuzpe, Asier15
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Halchenko, Yaroslav O.13
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Jacoby, Nir16
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Mentch, Jeff17
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Moodie, Craig A.1
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Ye, Zhifang18
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Schaefer, Theo A.J.19
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Camacho, Milton20
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Legarreta Gorroño, Jon Haitz21
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Lurie, Daniel J.22
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Waller, Lea23
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Frederick, Blaise B.24
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Tooley, Ursula A.25
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Madison, Thomas26
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Liem, Franz27
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Nielson, Dylan M.28
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Adebimpe, Azeez3
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Thompson, William H.1
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Smith, Robert E.29
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Jamison, Keith W.30
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Wexler, Joseph B.1
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Amlien, Inge K.12
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Plunkett, Dillon31
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Rivera-Dompenciel, Adriana32
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Urchs, Sebastian33
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Gau, Rémi34
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Sitek, Kevin R.17
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Groen, Iris I. A.35
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Stojić, Hrvoje36
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Nitsch, Alexander19
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Meisler, Steven37
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Naze, Sebastien38
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Seeley, Saren39
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Velasco, Pablo40
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Bhagwat, Nikhil33
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Naveau, Mikaël41
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Callenberg, Keith42
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Wang, Hao-Ting4
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Devenyi, Grabriel A.43
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Gomez, Daniel E. P.44
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Bellec, Pierre4
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Cieslak, Matthew3
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Isik, Ayse Ilkay45
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Kruper, John46
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Milham, Michael P.9
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Rokem, Ariel47
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Satterthwaite, Theodore D.3
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Wright, Jessey1
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Ghosh, Satrajit S.48
- 1. Department of Psychology, Stanford University
- 2. University of Texas at Austin
- 3. Perelman School of Medicine, University of Pennsylvania, PA, USA
- 4. SIMEXP Lab, CRIUGM, University of Montréal, Montréal, Canada
- 5. Université de Montréal, Montreal, QC, CA
- 6. Neurospin, CEA
- 7. Department of Radiology, Lausanne University Hospital and University of Lausanne
- 8. Department of Biostatistics, Johns Hopkins Bloomberg School of Public Health, MD, USA
- 9. Child Mind Institute
- 10. Department of Psychology, New York University
- 11. CENIR, INSERM U1127, CNRS UMR 7225, UPMC Univ Paris 06 UMR S 1127, Institut du Cerveau et de la Moelle épinière, ICM, F-75013, Paris, France
- 12. Center for Lifespan Changes in Brain and Cognition, University of Oslo
- 13. Dartmouth College: Hanover, NH, United States
- 14. Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń
- 15. Computational Neuroimaging Lab, BioCruces Health Research Institute
- 16. Department of Psychology, Columbia University
- 17. Speech & Hearing Bioscience & Technology Program, Harvard University
- 18. State Key Laboratory of Cognitive Neuroscience and Learning, Beijing Normal University
- 19. Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany
- 20. Department of Pediadrics, University of Calgary
- 21. Brigham and Women's Hospital, Mass General Brigham, Harvard Medical School, MA, USA
- 22. Department of Psychology, University of California, Berkeley
- 23. Charite Universitatsmedizin Berlin, Germany
- 24. McLean Hospital Brain Imaging Center, MA, USA
- 25. Department of Neuroscience, University of Pennsylvania, PA, USA
- 26. Department of Pediatrics, University of Minnesota, MN, USA
- 27. URPP Dynamics of Healthy Aging, University of Zurich
- 28. Machine Learning Team, National Institute of Mental Health, USA
- 29. Florey Institute of Neuroscience and Mental Health
- 30. Department of Radiology, Weill Cornell Medicine
- 31. Department of Psychology, Harvard University
- 32. Neuroscience Program, University of Iowa
- 33. Montreal Neurological Institute, McGill University
- 34. Neuro Data Science ORIGAMI Laboratory, McConnell Brain Imaging Centre, Faculty of Medicine, McGill University, Montréal, Canada
- 35. Department of Psychology, New York University, NY, USA
- 36. Max Planck UCL Centre for Computational Psychiatry and Ageing Research, University College London
- 37. Department of Psychiatry, University of Pennsylvania
- 38. QIMR Berghofer, Brisbane, Australia
- 39. Department of Psychiatry, Icahn School of Medicine at Mount Sinai
- 40. Center for Brain Imaging, New York University
- 41. Cyceron, UMS 3408 (CNRS - UCBN), France
- 42. Department of Psychiatry, University of Pittsburgh
- 43. Department of Psychiatry, McGill University
- 44. Donders Institute for Brain, Cognition and Behaviour, Radboud University Nijmegen
- 45. Max Planck Institute for Empirical Aesthetics
- 46. Department of Psychology, University of Washington
- 47. The University of Washington eScience Institute, WA, USA
- 48. McGovern Institute for Brain Research, MIT, MA, USA
Description
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
Files
nipreps/fmriprep-25.2.2.zip
Files
(24.4 MB)
| Name | Size | Download all |
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md5:c433cf15c315f6f273179036c901adf5
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Additional details
Related works
- Documents
- https://fmriprep.org (URL)
- Is part of
- 10.1038/s41592-018-0235-4 (DOI)
Software
- Repository URL
- https://github.com/nipreps/fmriprep