There is a newer version of the record available.

Published October 2, 2025 | Version v3
Dataset Open

SARS-CoV-2 mutational trajectories dataset

  • 1. ROR icon Charles University
  • 2. ROR icon Weizmann Institute of Science

Description

This dataset contains mutation frequency data derived from in vitro evolution experiments of the SARS-CoV-2 spike receptor-binding motif (RBM), conducted under low-stringency (LSS) and high-stringency (HSS) selection pressures. The data capture position-specific mutation distributions and frequencies across multiple rounds of selection and across several RBM variants. These experiments were designed to assess how laboratory-driven evolution parallels the natural evolution of SARS-CoV-2, particularly in the context of ACE2 receptor binding — the critical first step in viral infection.

Files

per_residue_observed_codon_frequencies.zip

Files (3.2 GB)

Name Size Download all
md5:4ba9085babf5da684797d53ccb67e49f
469.1 kB Preview Download
md5:3169043bf5202e7ea37edaf49533a652
143.3 kB Preview Download
md5:12f4628369fbc199d871c54d976e1a0e
683.5 kB Preview Download
md5:74eda86cd4313d7adf0a3024b577a954
19.0 MB Preview Download
md5:c25073f505e307b20677bb1124ef9433
3.9 MB Preview Download
md5:c44a7587204481bf66eeafa12151f661
38.4 MB Preview Download
md5:e1c5c8de6889d9d17bd99cf6e7e698dd
368.6 kB Preview Download
md5:5dae6904696e014e91722559195cc658
3.2 GB Preview Download
md5:7d5f8dde50863afccd11754e1af18886
1.9 kB Preview Download
md5:93145ec2bb029befc4ffe06abdceb9a5
3.8 MB Preview Download
md5:93145ec2bb029befc4ffe06abdceb9a5
3.8 MB Preview Download

Additional details

Funding

Ministry of Education Youth and Sports
National Infrastructure for Biological and Medical Imaging LM2023050 Czech-BioImaging
European Commission
The National Institute of Virology and Bacteriology LX22NPO5103
Czech Science Foundation
Unveiling Divergence and Convergence Points in Coronavirus Evolution for Host Receptor Recognition 25-17643M
Czech Science Foundation
Institutional support of the Institute of Biotechnology RVO:86652036

Software

Repository URL
https://github.com/host-patho-evo/mutation_scatter_plot
Programming language
Python
Development Status
Active