Published October 14, 2025
| Version v1.0.0
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Habitat complexity reduces feeding strength of freshwater predators (CRITTER) — Supplemental Statistics Report
Authors/Creators
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1.
University of Konstanz
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2.
University of the Basque Country
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3.
Ecologie Comportementale et Biologie des Populations de Poissons
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4.
Brunel University of London
Description
This is the final release of our Supplemental Statistics Report, accompanying the publication of Aranbarri et al. (2025, https://doi.org/10.1002/ece3.72258). The report requires the data (https://github.com/b-c-r/CRITTERdata, or https://doi.org/10.5281/zenodo.14891980) and the R functions (https://github.com/b-c-r/CRITTERcode, or https://doi.org/10.5281/zenodo.14898819). Find the underlying code to produce the report and the statistical outputs as *.rds files in the attached zip file or on GitHub (https://github.com/b-c-r/CRITTERstatistics).
Full Changelog: v0.1.2...v1.0.0
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statisticsReport.pdf
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Additional details
Related works
- Is supplement to
- Preprint: 10.1101/2025.02.22.639633 (DOI)
- Journal article: 10.1002/ece3.72258 (DOI)
- Is variant form of
- Computational notebook: https://github.com/b-c-r/CRITTERstatistics/tree/v1.0.0 (URL)
- Requires
- Software: 10.5281/zenodo.14894598 (DOI)
- Dataset: 10.5281/zenodo.14891980 (DOI)
Funding
Software
- Repository URL
- https://github.com/b-c-r/CRITTERstatistics
- Programming language
- R , RMarkdown
- Development Status
- Inactive
References
- Akaike, H. (1974). A new look at the statistical model identification. IEEE Transactions on Automatic Control, 19(6), 716–723. https://doi.org/10.1109/TAC.1974.1100705
- Allaire, J., Xie, Y., Dervieux, C., McPherson, J., Luraschi, J., Ushey, K., Atkins, A., Wickham, H., Cheng, J., Chang, W., & Iannone, R. (2025). rmarkdown: Dynamic documents for R [Computer software]. https://doi.org/10.32614/CRAN.package.rmarkdown
- Aranbarri, M., Flores, L., de Guzmán, I., Larrañaga, A., Rall, B. C., & Reiss, J. (2025a). Habitat complexity reduces feeding strength of freshwater predators. Ecology and Evolution, e72258. https://doi.org/10.1002/ece3.72258
- Aranbarri, M., Flores, L., de Guzmán, I., Larrañaga, A., Rall, B. C., & Reiss, J. (2025b). Habitat complexity reduces feeding strength of freshwater predators (No. 2025.02.22.639633). bioRxiv. https://doi.org/10.1101/2025.02.22.639633
- Barcroft, J., & Hill, A. V. (1910). The nature of oxyhæmoglobin, with a note on its molecular weight. The Journal of Physiology, 39(6), 411–428. https://doi.org/10.1113/jphysiol.1910.sp001350
- Bolker, B. M. (2008). Ecological models and data in R. Princeton University Press. https://math.mcmaster.ca/~bolker/emdbook/index.html
- Bolker, B. M. (2025). emdbook: Support functions and data for "Ecological models and data" (Version 1.3.14) [R]. https://doi.org/10.32614/CRAN.package.emdbook
- Bolker, B. M. & R. Development Core Team. (2023). bbmle: Tools for general maximum likelihood estimation (Version 1.0.25.1) [R]. https://doi.org/10.32614/CRAN.package.bbmle
- Carnell, R. (2024). lhs: Latin hypercube samples (Version 1.2.0) [Computer software]. https://doi.org/10.32614/CRAN.package.lhs
- Corless, R. M., Gonnet, G. H., Hare, D. E. G., Jeffrey, D. J., & Knuth, D. E. (1996). On the LambertW function. Advances in Computational Mathematics, 5(1), 329–359. https://doi.org/10.1007/BF02124750
- CRAN Team, & Temple Lang, D. (2025). RCurl: General network (HTTP/FTP/...) client interface for R (Version 1.98-1.17) [Computer software]. https://doi.org/10.32614/CRAN.package.RCurl
- Crawley, M. J. (2012). The R Book (2nd ed.). Wiley.
- Csárdi, G., Wickham, H., Chang, W., Flight, R., Müller, K., & Hester, J. (2025). sessioninfo: R session information (Version 1.2.3) [Computer software]. https://doi.org/10.32614/CRAN.package.sessioninfo
- FitzJohn, R. (2025). odin: ODE generation and integration (Version 1.2.7) [R, C]. https://doi.org/10.32614/CRAN.package.odin
- Flores, L., Bailey, R. A., Elosegi, A., Larrañaga, A., & Reiss, J. (2016). Habitat complexity in aquatic microcosms affects processes driven by detritivores. PLOS One, 11(11), e0165065. https://doi.org/10.1371/journal.pone.0165065
- Flores, L., Reiss, J., Larrañaga, A., Rall, B. C., Aranbarri, M., & Guzmán, I. de. (2025). Habitat complexity reduces feeding strength of freshwater predators (CRITTER)—Data [Dataset]. Zenodo. https://doi.org/10.5281/zenodo.14891980
- Holling, C. S. (1959a). Some characteristics of simple types of predation and parasitism. The Canadian Entomologist, 91(7), 385–398. https://doi.org/10.4039/Ent91385-7
- Holling, C. S. (1959b). The components of predation as revealed by a study of small-mammal predation of the european pine sawfly. The Canadian Entomologist, 91(5), 293–320. https://doi.org/10.4039/Ent91293-5
- Jeschke, J. M., Kopp, M., & Tollrian, R. (2002). Predator functional responses: Discriminating between handling and digesting prey. Ecological Monographs, 72(1), 95–112. https://doi.org/10.1890/0012-9615%2525282002%252529072%25255B0095%25253APFRDBH%25255D2.0.CO%25253B2
- Juliano, S. A. (2001). Nonlinear curve fitting: Predation and functional response curves. In S. M. Scheiner & J. Gurevitch (Eds.), Design and analysis of ecological experiments (2nd Edition, pp. 178–196). Chapman and Hall. https://doi.org/10.1093/oso/9780195131871.003.0010
- Kalinkat, G., Rall, B. C., Uiterwaal, S., & Uszko, W. (2023). Empirical evidence of type III functional responses and why it remains rare. Frontiers in Ecology and Evolution, 11, 1033818. https://doi.org/10.3389/fevo.2023.1033818
- Lyon, N. J. (2024). supportR: Support functions for wrangling and visualization (Version 1.4.0) [Computer software]. https://doi.org/10.32614/CRAN.package.supportR
- Microsoft, & Weston, S. (2022a). foreach: Provides foreach looping construct (Version 1.5.2) [R]. https://doi.org/10.32614/CRAN.package.foreach
- Microsoft, & Weston, S. (2022b). doParallel: Foreach parallel adaptor for the "parallel" package (Version 1.0.17) [R]. https://doi.org/10.32614/CRAN.package.doParallel
- Müller, K. (2025). here: A simpler way to find your files (Version 1.0.2) [Computer software]. https://doi.org/10.32614/CRAN.package.here
- Pritchard, D. W. (2025). frair: Tools for functional response analysis (Version 0.5.203) [Computer software]. https://doi.org/10.32614/CRAN.package.frair
- Pritchard, D. W., Paterson, R. A., Bovy, H. C., & Barrios-O'Neill, D. (2017). frair: An R package for fitting and comparing consumer functional responses. Methods in Ecology and Evolution, 8(11), 1528–1534. https://doi.org/10.1111/2041-210X.12784
- Rall, B. C., Aranbarri, M., Flores, L., de Guzmán, I., Larrañaga, A., & Reiss, J. (2025a). Habitat complexity reduces feeding strength of freshwater predators (CRITTER)—Code [R]. Zenodo. https://doi.org/10.5281/zenodo.14894598
- Rall, B. C., Aranbarri, M., Flores, L., de Guzmán, I., Larrañaga, A., & Reiss, J. (2025b). Habitat complexity reduces feeding strength of freshwater predators (CRITTER)—Supplemental Statistics Report. Zenodo. https://doi.org/10.5281/zenodo.14898819
- Rall, B. C., Guill, C., & Brose, U. (2008). Food-web connectance and predator interference dampen the paradox of enrichment. Oikos, 117(2), 202–213. https://doi.org/10.1111/j.2007.0030-1299.15491.x
- Real, L. A. (1977). The kinetics of functional response. The American Naturalist, 111(978), 289–300. https://doi.org/10.1086/283161
- Real, L. A. (1979). Ecological determinants of functional response. Ecology, 60(3), 481–485. https://doi.org/10.2307/1936067
- Ripley, B., & Venables, B. (2025). MASS: Support functions and datasets for Venables and Ripley's MASS (Version 7.3-65) [Computer software]. https://doi.org/10.32614/CRAN.package.MASS
- Rogers, D. (1972). Random search and insect population models. The Journal of Animal Ecology, 41(2), 369–383. https://doi.org/10.2307/3474
- Rosenbaum, B., & Rall, B. C. (2018). Fitting functional responses: Direct parameter estimation by simulating differential equations. Methods in Ecology and Evolution, 9(10), 2076–2090. https://doi.org/10.1111/2041-210X.13039
- Royama, T. (1971). A comparative study of models for predation and parasitism. Researches on Population Ecology, 13(1), 1–91. https://doi.org/10.1007/BF02511547
- Schwarz, G. (1978). Estimating the dimension of a model. The Annals of Statistics, 6(2), 461–464. https://doi.org/10.1214/aos/1176344136
- Urbanek, S. (2022). png: Read and write PNG images (Version 0.1-8) [Computer software]. https://doi.org/10.32614/CRAN.package.png
- Vonesh, J. R., & Bolker, B. M. (2005). Compensatory larval responses shift trade-offs associated with predator-induced hatching plasticity. Ecology, 86(6), 1580–1591. https://doi.org/10.1890/04-0535
- Vucic-Pestic, O., Rall, B. C., Kalinkat, G., & Brose, U. (2010). Allometric functional response model: Body masses constrain interaction strengths. Journal of Animal Ecology, 79(1), 249–256. https://doi.org/10.1111/j.1365-2656.2009.01622.x
- Wickham, H., François, R., Henry, L., Müller, K., & Vaughan, D. (2023). dplyr: A grammar of data manipulation (Version 1.1.4) [R]. https://doi.org/10.32614/CRAN.package.dplyr
- Wickham, H., & Henry, L. (2025). purrr: Functional programming tools (Version 1.1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.purrr
- Williams, R. J., & Martinez, N. D. (2004). Stabilization of chaotic and non-permanent food-web dynamics. The European Physical Journal B: Condensed Matter and Complex Systems, 38(2), 297–303. https://doi.org/10.1140/epjb/e2004-00122-1
- Xie, Y. (2016). bookdown: Authoring books and technical documents with R Markdown. Chapman and Hall/CRC. https://bookdown.org/yihui/bookdown
- Xie, Y. (2025a). bookdown: Authoring books and technical documents with R Markdown (Version 0.42) [Computer software]. https://doi.org/10.32614/CRAN.package.bookdown
- Xie, Y. (2025b). knitr: A general-purpose package for dynamic report generation in R (Version 1.50) [Computer software]. https://doi.org/10.32614/CRAN.package.knitr
- Xie, Y., Allaire, J. J., & Grolemund, G. (2018). R Markdown: The definitive guide. Chapman and Hall/CRC. https://bookdown.org/yihui/rmarkdown
- Xie, Y., Dervieux, C., & Riederer, E. (2020). R Markdown cookbook. Chapman and Hall/CRC. https://bookdown.org/yihui/rmarkdown-cookbook
- Xie, Y. & Posit Software, PBC. (2025). tinytex: Helper functions to install and maintain TeX Live, and compile LaTeX documents (Version 0.57) [Computer software]. https://doi.org/10.32614/CRAN.package.tinytex
- Zar, J. H. (2010). Biostatistical Analyses (5th ed.). Prentice Hall. https://elibrary.pearson.de/book/99.150005/9781292037110
- Zhu, H. (2024). kableExtra: Construct complex table with "kable" and pipe syntax (Version 1.4.0) [Computer software]. https://doi.org/10.32614/CRAN.package.kableExtra
