Published September 24, 2025 | Version v4

BASCULE: Bayesian inference and clustering of mutational signatures leveraging biological priors

  • 1. ROR icon University of Trieste
  • 2. ROR icon AREA Science Park

Description

In the preprint available at https://doi.org/10.1101/2024.09.16.613266 we present BASCULE, a new method to perform Bayesian signatures deconvolution and to cluster patients from the inferred exposures. The method can deconvolve any kind of mutational signature types (SBS, DBS, ID, etc.) including as input a reference catalogue of known signatures (i.e., COSMIC), and cluster the samples joinltly from the exposures of all signature types. BASCULE is available as an R package (https://github.com/caravagnalab/bascule.git). Here we release the data and code to reproduce the analysis on synthetic and real datasets presented in the preprint, in the "synthetic_data_validation.zip" and "real_data_validation.zip", respectively.

Files

real_data_validation.zip

Files (35.4 GB)

Name Size
md5:4233279a54a9605e02751a515e4fe68e
41.8 MB Download
md5:cbd9207c1e6cd17705013847bdb41940
1.7 GB Preview Download
md5:06af27da75b313be32dfc52ccda3c421
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Additional details

Software

Repository URL
https://github.com/caravagnalab/bascule
Programming language
R , Python