HLDA-ChromBPNet Contribution Scores and BigWigs (Part 1)
Description
Data repository for the Human Lung Development Atlas:
Preprint: https://doi.org/10.1101/2025.09.24.678382
Github: https://github.com/GreenleafLab/HLDA
This repository contains compressed ChromBPNet predicted sequence to accessibility contribution scores for each cell type.
celltype_average_contribution_scores.tar.gz = contains the predicted contribution scores (celltype.h5) and a bigwig for visualization of predicted contribution scores (celltype.bw). Also recommend loading the peaks for each cell type of interest as BED files, available within the Zenodo record for HLDA-ATAC ArchR Projects (Part 1).
To visualize the bigwig files for each cell type, please reference the DynSeq page and the WashU Epigenome Browser
-DynSeq: https://kundajelab.github.io/dynseq-pages/
-WashU Epigenome Browser: https://epigenomegateway.wustl.edu/browser/
Files
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Additional details
Related works
- Is supplement to
- 10.1101/2025.09.24.678382 (DOI)
Software
- Repository URL
- https://github.com/GreenleafLab/HLDA