Published September 19, 2025 | Version 0.1

Dataset for the study: Are Different Populations Fairly Represented in Single-Cell Omic Atlases?

Authors/Creators

  • 1. ROR icon Icahn School of Medicine at Mount Sinai

Description

File names and description

  • HCA scrnaseq data final.xlsx – Curated Human Cell Atlas single-cell RNA-seq sample metadata organized by tissue, ancestry, and sex.
  • Global_reference.csv – United Nations–based global population distributions by ancestry and sex used as a benchmarking reference for HCA data.
  • HTAN Data Final.xlsx – Curated single-cell tumor atlas metadata from the Human Tumor Atlas Network with ancestry and sex annotations.
  • SEER_combined_cancer_demographics.csv – SEER-derived U.S. cancer incidence rates standardized by ancestry and sex, used as population references for HTAN data.
  • psych-AD_media-1.csv – Metadata from the PsychAD consortium covering neuropsychiatric and neurodegenerative samples with demographic annotations.
  • ADRD_disease_demographics_wide.csv – Published prevalence estimates of Alzheimer’s disease and related dementias (ADRD) stratified by ancestry and sex, used as population references for the Psych-AD data≥

Files

ADRD_disease_demographics_wide.csv

Files (2.9 MB)

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md5:0c49b876304583b64813c82722360c8d
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Additional details

Additional titles

Alternative title
HCA, HTAN, PsychAD Ancestry and Sex Demographic Metadata vs. Reference Populations

Dates

Created
2025-09-19