CCR Collaborative Bioinformatics Resource [CCBR]

There is a newer version of the record available.

Published September 19, 2025 | Version v0.3.5
Software Open

SINCLAIR: SINgle CelL AnalysIs Resource

Authors/Creators

  • 1. Advanced Biomedical Computational Science, Frederick National Laboratory for Cancer Research, Frederick, MD 21702, USA

Description

  • Fix samplesheet check to allow multi-digit sample IDs. (#189, @kelly-sovacool)
  • New parameter save_cellranger_extra_files to control whether to save extra cellranger output files (bam, bai, cloupe) in addition to h5 files. Default is false to save space. (#195, @kelly-sovacool)
  • New largemem profile for memory-intensive processes. (#196, @kelly-sovacool)

Documentation updates

  • Major improvements to the docs website. (#160, @bianjh-cloud)
  • Fix rendering of bulleted lists in docs website. (#164, @kelly-sovacool)
  • Documentation for test data outputs updated. (#174, @wong-nw)
  • Minor documentation improvements (#175, @wong-nw)
  • Update test-info.md to reflect change in directory naming (#190, @wong-nw)

Other minor changes

  • Re-ordering of batch correction report. (#174 @wong-nw)
  • Rename 'output' directory to 'results' for the nextflow workflow. (#186, @kelly-sovacool)

Notes

Please cite SINCLAIR as below:

Files

CCBR/SINCLAIR-v0.3.5.zip

Files (54.3 MB)

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md5:28cafd5036821f7f86a6353d928ab5ab
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Additional details

Related works

Is supplement to
Software: https://github.com/CCBR/SINCLAIR/tree/v0.3.5 (URL)

Software

Repository URL
https://github.com/CCBR/SINCLAIR