Published May 27, 2026
| Version v0.4.0
Software
Open
scverse/spatialdata-plot: v0.4.0
Authors/Creators
- 1. European Molecular Biology Laboratory
- 2. Iber Lab - ETH Zürich
- 3. EMBL
- 4. Boehringer Ingelheim
- 5. @nvidia @scverse @theislab
- 6. @scverse
- 7. @lizard-bio
- 8. Max Planck Institut of Biochemistry
Description
<!-- Release notes generated using configuration in .github/release.yml at main -->
What's Changed
Added
- Add Colour and palettes card to gallery by @timtreis in https://github.com/scverse/spatialdata-plot/pull/663
- Extend make_palette_from_data to support labels by @timtreis in https://github.com/scverse/spatialdata-plot/pull/670
- Add density mode to render_points by @timtreis in https://github.com/scverse/spatialdata-plot/pull/679
- Allow
outline_colorto accept an obs column by @timtreis in https://github.com/scverse/spatialdata-plot/pull/683 - Add method='datashader' to render_images for sparse images by @timtreis in https://github.com/scverse/spatialdata-plot/pull/676
- Add interactive annotation ability via
.pl.annotate()by @timtreis in https://github.com/scverse/spatialdata-plot/pull/684
Changed
- Improved error message for incorrect
gene_symbolscolumns by @SAY-5 in https://github.com/scverse/spatialdata-plot/pull/658 - Parameter
palettecan now be used without specifyinggroupsby @SAY-5 in https://github.com/scverse/spatialdata-plot/pull/659 - Added guard against annotated
instance_id==0elements inrender_labelsby @SAY-5 in https://github.com/scverse/spatialdata-plot/pull/660 - Raise clear error on disjoint instance IDs in render_shapes/labels/points by @SAY-5 in https://github.com/scverse/spatialdata-plot/pull/661
- Raise on color name collision with column in render_* by @timtreis in https://github.com/scverse/spatialdata-plot/pull/665
- Honor explicit table_name= when element has same-named column by @timtreis in https://github.com/scverse/spatialdata-plot/pull/666
- Reject NaN pixels in render_images by @timtreis in https://github.com/scverse/spatialdata-plot/pull/673
- Raise clear error for all-empty shapes by @timtreis in https://github.com/scverse/spatialdata-plot/pull/674
- Raise clear error for 3D (z-stack) images and labels by @timtreis in https://github.com/scverse/spatialdata-plot/pull/675
- Raise on obs/var key collision in table-based coloring by @timtreis in https://github.com/scverse/spatialdata-plot/pull/678
- Skip wasted cs-level table copy in render_shapes/render_labels by @timtreis in https://github.com/scverse/spatialdata-plot/pull/680
- Warn when r/g/b channels have divergent ranges by @timtreis in https://github.com/scverse/spatialdata-plot/pull/682
Fixed
- Fix render_points(color="z") silently dropping data column by @timtreis in https://github.com/scverse/spatialdata-plot/pull/667
- Fix datashader resolution collapse on cropped coordinate offsets by @timtreis in https://github.com/scverse/spatialdata-plot/pull/669
- Fix render_points crash when coloring by spatial coord (x/y) by @timtreis in https://github.com/scverse/spatialdata-plot/pull/671
- Fix render_images(norm=LogNorm()) crash on zero/non-positive data by @timtreis in https://github.com/scverse/spatialdata-plot/pull/672
New Contributors
- @SAY-5 made their first contribution in https://github.com/scverse/spatialdata-plot/pull/658
Full Changelog: https://github.com/scverse/spatialdata-plot/compare/v0.3.4...v0.4.0
Files
scverse/spatialdata-plot-v0.4.0.zip
Files
(19.2 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:07f04f502be8267e638d3860f06015d6
|
19.2 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/scverse/spatialdata-plot/tree/v0.4.0 (URL)
Software
- Repository URL
- https://github.com/scverse/spatialdata-plot