Published September 5, 2025 | Version v1
Dataset Open

C.elegans cell tracking with gene expression

Authors/Creators

  • 1. ROR icon Institut de Biologie du Développement Marseille
  • 2. ROR icon FORTH Institute of Molecular Biology and Biotechnology

Description

Dataset of C. elegans embryonic development where cell tracks and positions are available together with gene expression of 204 genes.

This dataset is the combination of the cell position tracking from Systems Properties and Spatiotemporal Regulation of Cell Position Variability during Embryogenesis, Li, Xiaoyu et al. Cell Reports, Volume 26, Issue 2, 313 - 321.e7 and gene expression data from Ma, X., Zhao, Z., Xiao, L. et al. A 4D single-cell protein atlas of transcription factors delineates spatiotemporal patterning during embryogenesis. Nat Methods 18, 893–902 (2021).

This is to be used in napari with the napari-relax plugin

Files

Files (43.6 MB)

Name Size
md5:d5575e4f287253ba85c6aca387df932c
43.6 MB Download

Additional details

Software

Repository URL
https://github.com/GuignardLab/napari-relax
Programming language
Python
Development Status
Active