Thesis - Supplementary data 3.2. TPMs for all IWGSC RefSeq v1.1 genes in sub-spike RNA-seq samples

Description:
This dataset contains RNA-seq derived transcript per million (TPM) values for all wheat genes expressed in the sub-spike tissue. It also includes differential expression results generated using DESeq2, and multiple functional annotations integrated from external sources to aid interpretation.

Content overview:

• TPM expression matrices

• Differential expression (DE) results (DESeq2 outputs)

• Candidate gene lists

• Functional annotations including:

  • Homoeologue group numbers and TF family assignments from Evans et al., 2022 (doi: 10.1093/g3journal/jkac147)

  • Hormone-related annotations from Max et al., 2022 (Zenodo dataset, doi: 10.5281/zenodo.7082848)

  • Homoeologue group numbers and InterPro annotations from Ensembl Plants

  • Gene Ontology (GO) term: IWGSC RefSeq v2.1

  • Functional descriptions from FunRiceGenes

  • Comparative analysis to RNA-seq in barley: Walla et al., 2020 (doi: 10.1104/pp.20.00087)