Published August 31, 2025 | Version v1.0.0
Software Open

HUBMet: Human Blood Metabolite Database and Analytical Platform

Authors/Creators

  • 1. ROR icon Linköping University

Description

v1.0.0 - Initial Release

Overview

This is the first release of HUBMet, an online web server for human blood metabolome analysis.

Functional Modules

  • Classifier: Human Blood Metabolites Annotation
  • ORA: Metabolite Over-Representation Analysis
  • MSEA: Metabolite Set Enrichment Analysis
  • TSA: Tissue Specificity Analysis
  • MPNet: Metabolite-Protein Network analysis

Folder Structure

  • Script/: Code of functional modules in HUBMet
  • Data/: Curated HUBMet data used for running the scripts
  • testda/: Toy data for testing the scripts
  • Output/: Contains result tables and figures generated by the scripts

Main Contributors

  • Xingyue Wang (ORCID) – Concept, Development, Analysis, Testing
  • Xiangyu Qiao (ORCID) – Concept, Development, Analysis, Testing
  • Wen Zhong (ORCID) – Concept, Code Review, Analysis, Testing

Related publication

Wang X, Qiao X, Zenere A, Barde S, Wang J, Zhong W. HUBMet: an integrative database and analytical platform for human blood metabolites and metabolite-protein associations. Genome Biol. 2025 Dec 27;27(1):7. doi: 10.1186/s13059-025-03922-x

Notes

This release includes:

- Script: MIT License
- Data: CC BY-NC 4.0

Files

Wen-Zhong-Lab/HUBMet-v1.0.0.zip

Files (7.9 MB)

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Additional details

Related works

Is supplement to
Software: https://github.com/Wen-Zhong-Lab/HUBMet/tree/v1.0.0 (URL)

Software

Repository URL
https://github.com/Wen-Zhong-Lab/HUBMet
Programming language
R , Python