Published August 27, 2025 | Version v1
Computational notebook Open

Analysis of error profiles of Indels and structural variants in deep sequencing data

  • 1. ROR icon St. Jude Children's Research Hospital

Description

Supplementary Data and Codes used to generate figures in the manuscript

We established Indel and SV error profiles in deep next generation sequencing data that enabled superior tumor detection performance at very low burdens, which has a significant impact on the clinical diagnosis and monitoring of human cancers and beyond. Our data also suggests future research directions to improve recovery of mutant reads in ultra-deep sequencing applications.

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README.md

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Additional details

Funding

National Cancer Institute
R01CA273326
National Cancer Institute
R01CA293587
National Cancer Institute
U10CA180886
National Cancer Institute
U10CA180899
Cancer Support Center
P30CA021765
Leukemia and Lymphoma Society
7025-21
St. Baldrick's Foundation
SAT-21-064-01-SBF-ACS

Software

Repository URL
https://github.com/stjude/SVIndelGenotyper
Programming language
R , Python