Published August 27, 2025
| Version v1
Computational notebook
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Analysis of error profiles of Indels and structural variants in deep sequencing data
Authors/Creators
Description
Supplementary Data and Codes used to generate figures in the manuscript
We established Indel and SV error profiles in deep next generation sequencing data that enabled superior tumor detection performance at very low burdens, which has a significant impact on the clinical diagnosis and monitoring of human cancers and beyond. Our data also suggests future research directions to improve recovery of mutant reads in ultra-deep sequencing applications.
Files
README.md
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Additional details
Funding
- National Cancer Institute
- R01CA273326
- National Cancer Institute
- R01CA293587
- National Cancer Institute
- U10CA180886
- National Cancer Institute
- U10CA180899
- Cancer Support Center
- P30CA021765
- Leukemia and Lymphoma Society
- 7025-21
- St. Baldrick's Foundation
- SAT-21-064-01-SBF-ACS
Software
- Repository URL
- https://github.com/stjude/SVIndelGenotyper
- Programming language
- R , Python