degutis/layer_simulation: Version 1.0 – Submission Release

Overview

This is the first stable release (v1.0.0) of the code accompanying:

"Vascular Draining Confounds Laminar Decoding in fMRI"
by Jonas Karolis Degutis, Denis Chaimow, Romy Lorenz

This version corresponds to the analyses and figures used for the preprint.

Contents

• Complete simulation pipeline (layer_simulation/code)
• Reproducible scripts for each figure:
  • runSimulationParallel.py → Figures 1, 2a, 5
  • runSimulation_twoPatterns.py → Figure 2b
  • runDeconvolution.py → Figures 1, 2
  • runSimulation_samePattern.py → Figure 3
  • runVoxMisalignment.py, runVascModelMisalignment.py → Figure 4
• Metadata:
  • README.md
  • LICENSE
  • requirements.txt

Citation

If you use this code, please cite:

Degutis JK, Chaimow D, Lorenz R.
Vascular Draining Confounds Laminar Decoding in fMRI.

Notes

• See the README for instructions on running simulations and reproducing figures.