Published 2025
| Version v2
Dataset
Open
Ex vivo modelling of human colorectal cancer liver metastasis using normothermic machine perfusion
Authors/Creators
-
Trebo, Manuel
(Contact person)1
-
Maurer, Thomas
(Contact person)2
-
Krendl, Felix Julius3
-
Salcher, Stefan4
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Martowicz, Agnieszka4, 5
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Hautz, Theresa6, 3
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Sopper, Sieghart4
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Amann, Arno7, 4
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Cardini, Benno3
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Poelsler, Lukas H3
- Mair, Anna4
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Hofmann, Julia3
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Meszaros, Andras3
- Hermann, Martin3
- Günther, Michael8, 9
- Ormanns, Steffen8, 9
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Trajanoski, Zlatko10
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Schneeberger, Stefan6, 3
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Wolf, Dominik4
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Oberhuber, Rupert3
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Pircher, Andreas
(Contact person)6, 4
- 1. (Department of Internal Medicine V, Hematology and Oncology, and Tyrolean Cancer Research Institute (TKFI), Medical University of Innsbruck, Innsbruck, Austria)
- 2. Department of Internal Medicine V, Hematology and Oncology, and Tyrolean Cancer Research Institute (TKFI), Medical University of Innsbruck, Innsbruck, Austria
- 3. Department of Visceral, Transplant and Thoracic Surgery, Center of Operative Medicine, organLife Laboratory and D. Swarovski Research Laboratory, Medical University of Innsbruck, Innsbruck, Austria
- 4. Department of Internal Medicine V, Hematology and Oncology, Comprehensive Cancer Center Innsbruck (CCCI), Austrian Comprehensive Cancer Network (ACCN) and Tyrolean Cancer Research Institute (TKFI), Medical University of Innsbruck, Innsbruck, Austria
- 5. Tyrolpath Obrist Brunhuber GmbH, Zams, Austria
- 6. Innsbruck Medical University
- 7. Tirol Kliniken
- 8. Innpath Institute of Pathology, Tirol Kliniken, Innsbruck, Austria
- 9. Institute of General Pathology, Medical University Innsbruck, Innsbruck, Austria
- 10. Biocenter, Institute of Bioinformatics, Medical University of Innsbruck, Innsbruck, Austria
Contributors
Researcher (2):
- 1. Department of Internal Medicine V, Hematology and Oncology, and Tyrolean Cancer Research Institute (TKFI), Medical University of Innsbruck, Innsbruck, Austria
Description
This archive contains input data, environment yml files as well as all results related to the single-cell RNA-seq analysis from the paper:
Trebo, Maurer, Krendl, Salcher, et al. (2025). Ex vivo modelling of human colorectal cancer liver metastasis using normothermic machine perfusion
In particular, it contains the following files
- data.zip: h5ad file with processed scRNA-seq and ST data
- Analysis.zip: executed jupyter notebooks as html to recapitulate analysis steps
- environments.zip: YAML files for the conda environments used for Analysis
Files
Analysis.zip
Additional details
Dates
- Created
-
2025-04-17
Software
- Programming language
- Python