The nf-core framework for community-curated bioinformatics pipelines.

Published August 18, 2025 | Version 1.6.2

Software Open

Robust Handling of Species Missing from NCBI Assembly Stats

The script now ensures that an assembly ratio and GC content output file are always generated for every sample, even when the target species is not found in the NCBI assembly statistics database.
In cases where no species match is found, the output files are created with clear "None" placeholders for each relevant metric. This approach keeps downstream analyses and workflows intact and makes the absence of reference data explicit in the results.

Notes

If you use `nf-core tools` in your work, please cite the `nf-core` publication

Name	Size	Download all
wslh-bio/spriggan-1.6.2.zip md5:a0f388d86c52ceb4784e8450db523bfb	471.2 MB	Preview Download

Is supplement to: Software: https://github.com/wslh-bio/spriggan/tree/1.6.2 (URL)