Spatial2GWAS: a database for linking spatial transcriptomic regions with GWAS traits
Authors/Creators
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1.
The University of Texas Health Science Center
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2.
West China Hospital of Sichuan University
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3.
The University of Texas Health Science Center at Houston
Description
Filename_scdrs_significant_group_table.tar.gz: the spatial region-GWAS trait association analysis results using the scDRS method
Filename_gene_associated_table.tar.gz: genes co-expressed with GWAS trait-associated genes identified using Pearson's correlation analysis
Filename_drug_target.tar.gz: overlap of genes co-expressed with GWAS trait-associated genes and drug targets in DGIdb 5.0
Filename_spot_DEGs_table.tar.gz: differentially expressed genes between trait-related and unrelated spots/bins
Filename_region_DEGs_table.tar.gz: differentially expressed genes between trait-related and unrelated spatial regions
Filename_spot_GO_table.tar.gz: enriched GO terms based on differentially expressed genes between trait-related and unrelated spots/bins
Filename_region_GO_table.tar.gz: enriched GO terms based on differentially expressed genes between trait-related and unrelated spatial regions
Filename_spot_KEGG_table.tar.gz: enriched KEGG pathways based on differentially expressed genes between trait-related and unrelated spots/bins
Filename_region_KEGG_table.tar.gz: enriched KEGG pathways based on differentially expressed genes between trait-related and unrelated spatial regions
analysis code.zip: scripts for scDRS pipeline and downstream analysis
Files
analysis code.zip
Files
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