thierrygosselin/stackr: **v.0.4.5**

v.0.4.5

• temporary fix to tidy_genomic_data to read unconventional Tassel VCF

• new function ibdg_fh computes the FH measure that was previously computed in summary_haplotypes. It now works with biallelic and multiallelic data.

  The FH measure is based on the excess in the observed number of homozygous genotypes within an individual relative to the mean number of homozygous genotypes expected under random mating (see function for details). The IBDg in the name is because the measure is a proxy of the realized proportion of the genome that is identical by descent by reference to the current population under hypothetical random mating.

• missing_visualization now computes the FH measure and look for correlation with average missingness per individual.

• tidy_stacks_haplotypes_vcf is now deprecated in favor of using tidy_genomic_data that will import haplotypic vcf files.