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Published August 13, 2025 | Version v1.0.0
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qqhair2000/PlantCellSeg-ImageJ: Initial release of Plant_cell_seg

Authors/Creators

  • 1. Academia Sinica

Description

PlantCellSeg-ImageJ is a modular ImageJ/Fiji macro pipeline for segmenting plant epidermal cells from 3D confocal microscopy images.
It supports optional SurfCut2 Lite preprocessing to handle curved tissues such as leaves, and uses MorphoLibJ for morphological watershed segmentation.
The pipeline outputs ROIs for quantitative shape analysis, and is fully reproducible and extensible for large-scale plant imaging studies.

 

PlantCellSeg-ImageJ 是一個模組化的 ImageJ/Fiji 巨集流程,用於從 3D 共軛焦顯微影像中分割植物表皮細胞
支援可選的 SurfCut2 Lite 前處理,以應對葉片等曲面組織,並使用 MorphoLibJ 進行形態學分水嶺分割。
該流程可輸出 ROI 供定量形狀分析,適合大規模植物影像研究,且完全可重現與擴展。

Files

20160406 3Gp L2 1.tif

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Additional details

Software