ScaDS.AI

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Published August 12, 2025 | Version v2
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Reproducible Bio-Image Analysis using Python, Napari, Jupyter and AI

Creators

  • 1. ROR icon Center for Scalable Data Analytics and Artificial Intelligence
  • 2. ROR icon Leipzig University

Description

In this slide deck we learn how to write reproducible bio-image analysis code in Jupyter notebooks. Goal is not just to have code running elsewhere reproducibly, but also enabling others to understand workflows to enable them reproducing the analysis also in their mind and potentially other tools. Additionally we cover how to generate Jupyter notebooks from Napari and using artificial intelligence, namely bia-bob.

Files

Repro_BIA_PNAI.pdf

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