There is a newer version of the record available.

Published December 13, 2024 | Version v2.12.0
Software Open

epi2me-labs/wf-metagenomics: v2.12.0

Authors/Creators

  • 1. Oxford Nanopore Technologies
  • 2. @Birkbeck
  • 3. @nanoporetech

Description

Added

  • bracken_threshold parameter to adjust bracken minimum read threshold, default 10.

Fixed

  • Publish AMR results to the output directory when real time is disabled.
  • Abricate process failure is now correctly caught by the workflow.

Changed

  • Reconcile workflow with wf-template v5.3.3
  • Update wf-metagenomics image for improved fastcat/bamstats.

Files

epi2me-labs/wf-metagenomics-v2.12.0.zip

Files (84.4 MB)

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md5:b09ecd30f42cf68aeb7decd11ca9c317
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Additional details

Related works

Is supplement to
Software: https://github.com/epi2me-labs/wf-metagenomics/tree/v2.12.0 (URL)

Software

Repository URL
https://github.com/epi2me-labs/wf-metagenomics