Published March 8, 2023
| Version v2.0.9
Software
Open
epi2me-labs/wf-metagenomics: v2.0.9
Authors/Creators
- 1. Oxford Nanopore Technologies
- 2. @Birkbeck
- 3. @nanoporetech
Description
Changed
- Update kraken databases to latest and ensure relevant taxdump is used.
Added
- Plot species richness curves.
- Provide (original and rarefied, i.e. all the samples have the same number of reads) abundance tables listing taxa per sample for a given taxonomic rank.
- Add diversity indices.
- Memory requirement help text.
Files
epi2me-labs/wf-metagenomics-v2.0.9.zip
Files
(13.5 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:78059e961262e995e89f6e1781e451d8
|
13.5 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/epi2me-labs/wf-metagenomics/tree/v2.0.9 (URL)
Software
- Repository URL
- https://github.com/epi2me-labs/wf-metagenomics