There is a newer version of the record available.

Published March 5, 2024 | Version v1.1.1
Software Open

epi2me-labs/wf-transcriptomes: v1.1.1

Authors/Creators

  • 1. @Birkbeck
  • 2. Oxford Nanopore Technologies
  • 3. @nanoporetech
  • 4. @nanoporetech, @epi2me-labs

Description

Changed

  • Improved handling of different annotation file types (eg. .gtf/.gff/.gff3) in de_analysis mode.
  • Improved handling of annotation files that do not contain version numbers in transcript_id (such as gtf's from Ensembl).

Fixed

  • Differential expression failing with 10 or more samples.
  • Regression causing the DE analysis numeric parameters to not be evaluated correctly.

Files

epi2me-labs/wf-transcriptomes-v1.1.1.zip

Files (124.4 MB)

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md5:26e1aff3e72130fd152718660a1406eb
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Additional details

Related works

Is supplement to
Software: https://github.com/epi2me-labs/wf-transcriptomes/tree/v1.1.1 (URL)

Software

Repository URL
https://github.com/epi2me-labs/wf-transcriptomes