There is a newer version of the record available.

Published June 14, 2023 | Version v0.1.13
Software Open

epi2me-labs/wf-transcriptomes: v0.1.13

Authors/Creators

  • 1. @Birkbeck
  • 2. Oxford Nanopore Technologies
  • 3. @nanoporetech
  • 4. @nanoporetech, @epi2me-labs

Description

Added

  • Handling for GFF3 reference_annotation file type.
  • Warning for the --transcriptome_source denovo pipeline option.

Changed

  • Enum choices are enumerated in the --help output
  • Enum choices are enumerated as part of the error message when a user has selected an invalid choice
  • Bumped minimum required Nextflow version to 22.10.8

Fixed

  • Replaced --threads option in fastqingress with hardcoded values to remove warning about undefined param.threads
  • Fix for the --transcriptome_source denovo pipeline option.

Files

epi2me-labs/wf-transcriptomes-v0.1.13.zip

Files (124.3 MB)

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md5:e329c13986f094aec814e15f3598d0b5
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Additional details

Related works

Is supplement to
Software: https://github.com/epi2me-labs/wf-transcriptomes/tree/v0.1.13 (URL)

Software

Repository URL
https://github.com/epi2me-labs/wf-transcriptomes