Published August 4, 2025 | Version v1
Dataset Open

Processed Dataset for 'Rapid Salmonella serovar classification using AI-enabled hyperspectral microscopy with enhanced data preprocessing and multimodal fusion'

  • 1. EDMO icon Michigan State University
  • 2. USDA-ARS

Description

This dataset is presented in the following publication. Please cite this publication if you use the dataset.

Papa, M., Bhattacharya, S., Park, B., & Yi, J. (2025). Rapid Salmonella serovar classification using AI-enabled hyperspectral microscopy with enhanced data preprocessing and multimodal fusion. Foods, 14(15), 2737. doi: https://doi.org/10.3390/foods14152737

spectra_single_cell.csv: Single-cell spectral data extracted from hyperspectral data cubes ("hypercubes"). Each row contains the spectral features and serovar label of one bacterial cell. Note that each hypercube contains multiple cells.

images.zip: RGB composite images generated from each hypercube, with one image corresponding to one hypercube. This image directory follows the PyTorch ImageFolder-style structure: 

  • train/: subfolders named by Salmonella serovar, each containing training images.
  • evaluate/: A single folder containing all test images.

Note: This may include a .DS_Store file automatically generated by macOS. It can be safely ignored or deleted.

Files

images.zip

Files (784.4 MB)

Name Size Download all
md5:9a4f042a3c26045176b5de0667a50ef0
640.1 MB Preview Download
md5:058dd48f29f362a1510cd667bb212cfa
144.2 MB Preview Download

Additional details

Related works

Is part of
Journal article: 10.3390/foods14152737 (DOI)
Preprint: 10.20944/preprints202507.1691.v1 (DOI)