redi: v0.14.0

2015-04-09 v0.14.0

• Summary: RED-I has multiple functional and other improvements in this release: licensing has been added in each file. RED-I is now available from PyPI as 'redi'. Most importantly, when multiple lab results come in on the same day, RED-I now takes the first lab of the day, unless it has a value of 'canceled'. RED-I also auto-resumes in the case of a network timeout. Reporting has been improved with more information.

• Update README.md (Andrei Sura)

• removed loinc_code from get_key_timestamp sorting function. data should only be sorted by study_id, form, and date_time_stamp initially. (Nicholas Rejack)
• Add license to all .py files (Ruchi Vivek Desai)
• Remove bug in pull request for github issue #104 (Ruchi Vivek Desai)
• Add initial changes to code for fixing bug in Github issue #104 (Ruchi Vivek Desai)
• Move check for file existence from GetEMRData to SimpleConfigParser (Ruchi Vivek Desai)
• Log errors related to EMR server to facilitate debugging of redi run from cron (Ruchi Vivek Desai)
• Add bad Research IDs to the Error block in the report that gets emailed (Ruchi Vivek Desai)
• #133 Add actual site name to subject line in the emailed report (Ruchi Vivek Desai)
• Add tools for creating input xml files from csv + new profiling task (Andrei Sura)
• Call compress_data_using_study_form_date inside sort_element_tree This is one example of pre-processing data before using translation table... (Ruchi Vivek Desai)
• Update the unit test test/TestSortElementTree.py (Ruchi Vivek Desai)
• Add pycrypto as a required library for installation in setup.py (Ruchi Vivek Desai)
• make clean - Remove generated pysftp files during testing (Ruchi Vivek Desai)
• Save partial fix for filtering out multiple results on same day (Ruchi Vivek Desai)
• Minor corrections to Makefile due rename of bin to redi (Ruchi Vivek Desai)
• removed line in setup.py. README.md already included in MANIFEST. In addition, defining 'redi' package twice in package_data overwrites the previous definition, causing .xsd and .xsl files to not be included (Nicholas Rejack)
• Uncomment raise MaxRetryError and change the factor by which sleep time increases to 6 (Ruchi Vivek Desai)
• Correct the function name for retry number 10 (Ruchi Vivek Desai)
• Fix test case broken by commit id adf6f96764f319b41027e1423ea85862e0f3162f (Ruchi Vivek Desai)
• Make changes suggested in the review of pull request (Ruchi Vivek Desai)
• Move import sys to top of the code (Ruchi Vivek Desai)
• Correct concatenation of Attempt no and retry_count (Ruchi Vivek Desai)
• Add comment for dummy_init function (Ruchi Vivek Desai)
• Add code for github issue #108 auto resume (Ruchi Vivek Desai)
• Add working test for send_data_to_redcap function (Ruchi Vivek Desai)
• Add test for send_data_to_redcap function (Ruchi Vivek Desai)
• Add code for auto-resume on network timeout (Ruchi Vivek Desai)