Published August 5, 2025 | Version v3

reference data for TidyGWAS

Authors/Creators

  • 1. ROR icon Karolinska Institutet

Description

Reference data curated for tidyGWAS, for version 1.0.0

Contains:

  1. RSID, CHR, POS, ALT ALLELE and REF ALLELE from dbSNP v155, for both GRCh37 and GRCh38
  2. Allele frequencies for five super populations from 30x 1000 genomes
  3. dbSNP merged RSID data
  4. Indel reference data, left-aligned and trimmed from dbSNP157
  5. Allele frequenecy for UKB populations for ancestry composition

 

Ancestry_data.parquet contains merged allele frequences and principal components downloaded from:
https://figshare.com/ndownloader/files/31620968 

https://figshare.com/ndownloader/files/31620953

 

Files

Files (25.5 GB)

Name Size
md5:4e355dd267089f8be77cbaf181f9b39e
25.5 GB Download

Additional details

Software

Repository URL
https://github.com/Ararder/tidyGWAS
Programming language
R