DELLY: structural variant discovery by integrated paired-end and split-read analysis.

Delly is an integrated structural variant (SV) prediction method that can discover and genotype deletions, insertions, duplications, inversions and translocations at single-nucleotide resolution in short-read and long-read massively parallel sequencing data. It uses paired-ends, split-reads and read-depth to sensitively and accurately delineate genomic rearrangements throughout the genome.